Index

_

__init__() (chemdataextractor.biblio.bibtex.BibtexParser method) (chemdataextractor.biblio.person.PersonName method) (chemdataextractor.biblio.xmp.XmpParser method) (chemdataextractor.config.Config method) (chemdataextractor.data.Package method) (chemdataextractor.doc.document.Document method) (chemdataextractor.doc.element.BaseElement method) (chemdataextractor.doc.element.CaptionedElement method) (chemdataextractor.doc.figure.Figure method) (chemdataextractor.doc.meta.MetaData method) (chemdataextractor.doc.table.Table method) (chemdataextractor.doc.text.BaseText method) (chemdataextractor.doc.text.Caption method) (chemdataextractor.doc.text.Cell method) (chemdataextractor.doc.text.Footnote method) (chemdataextractor.doc.text.Heading method) (chemdataextractor.doc.text.Paragraph method) (chemdataextractor.doc.text.RichToken method) (chemdataextractor.doc.text.Sentence method) (chemdataextractor.doc.text.Span method) (chemdataextractor.doc.text.Subsentence method) (chemdataextractor.doc.text.Text method) (chemdataextractor.doc.text.Title method) (chemdataextractor.doc.text.Token method) (chemdataextractor.model.base.BaseModel method) (chemdataextractor.model.base.BaseType method) (chemdataextractor.model.base.InferredProperty method) (chemdataextractor.model.base.ListType method) (chemdataextractor.model.base.ModelList method) (chemdataextractor.model.base.ModelType method) (chemdataextractor.model.base.SetType method) (chemdataextractor.model.units.length.LengthUnit method) (chemdataextractor.model.units.mass.MassUnit method) (chemdataextractor.model.units.temperature.TemperatureUnit method) (chemdataextractor.model.units.time.TimeUnit method) (chemdataextractor.model.units.unit.DimensionlessUnit method) (chemdataextractor.model.units.unit.Unit method) (chemdataextractor.nlp.abbrev.AbbreviationDetector method) (chemdataextractor.nlp.allennlpwrapper.AllenNlpWrapperTagger method) (chemdataextractor.nlp.corpus.LazyCorpusLoader method) (chemdataextractor.nlp.lexicon.Lexeme method) (chemdataextractor.nlp.lexicon.Lexicon method) (chemdataextractor.nlp.tag.ApTagger method) (chemdataextractor.nlp.tag.AveragedPerceptron method) (chemdataextractor.nlp.tag.CrfTagger method) (chemdataextractor.nlp.tag.DictionaryTagger method) (chemdataextractor.nlp.tag.EnsembleTagger method) (chemdataextractor.nlp.tag.NoneTagger method) (chemdataextractor.nlp.tag.RegexTagger method) (chemdataextractor.nlp.tokenize.BertWordTokenizer method) (chemdataextractor.nlp.tokenize.SentenceTokenizer method) (chemdataextractor.nlp.tokenize.WordTokenizer method) (chemdataextractor.parse.auto.AutoSentenceParser method) (chemdataextractor.parse.auto.AutoTableParser method) (chemdataextractor.parse.auto.BaseAutoParser method) (chemdataextractor.parse.elements.And method) (chemdataextractor.parse.elements.BaseParserElement method) (chemdataextractor.parse.elements.End method) (chemdataextractor.parse.elements.First method) (chemdataextractor.parse.elements.IWord method) (chemdataextractor.parse.elements.Optional method) (chemdataextractor.parse.elements.ParseElementEnhance method) (chemdataextractor.parse.elements.ParseException method) (chemdataextractor.parse.elements.ParseExpression method) (chemdataextractor.parse.elements.Regex method) (chemdataextractor.parse.elements.SkipTo method) (chemdataextractor.parse.elements.Start method) (chemdataextractor.parse.elements.Tag method) (chemdataextractor.parse.elements.Word method) (chemdataextractor.parse.nmr.NmrParser method) (chemdataextractor.reader.base.BaseReader method) (chemdataextractor.relex.cluster.Cluster method) (chemdataextractor.relex.entity.Entity method) (chemdataextractor.relex.pattern.Pattern method) (chemdataextractor.relex.phrase.Phrase method) (chemdataextractor.relex.relationship.Relation method) (chemdataextractor.scrape.base.BaseField method) (chemdataextractor.scrape.base.BaseScraper method) (chemdataextractor.scrape.clean.Cleaner method) (chemdataextractor.scrape.entity.Entity method) (chemdataextractor.scrape.entity.EntityList method) (chemdataextractor.scrape.fields.BoolField method) (chemdataextractor.scrape.fields.EntityField method) (chemdataextractor.scrape.fields.StringField method) (chemdataextractor.scrape.fields.UrlField method) (chemdataextractor.scrape.pub.rsc.RscSearchScraper method) (chemdataextractor.scrape.scraper.ResponseSearchResult method) (chemdataextractor.scrape.scraper.SeleniumSearchResult method) (chemdataextractor.scrape.selector.Selector method) (chemdataextractor.scrape.selector.SelectorList method) (chemdataextractor.text.normalize.ChemNormalizer method) (chemdataextractor.text.normalize.ExcessNormalizer method) (chemdataextractor.text.normalize.Normalizer method) (chemdataextractor.text.processors.Chain method) (chemdataextractor.text.processors.Discard method) (chemdataextractor.text.processors.LAdd method) (chemdataextractor.text.processors.LStrip method) (chemdataextractor.text.processors.RAdd method) (chemdataextractor.text.processors.RStrip method) (chemdataextractor.text.processors.Substitutor method)

A

abbr_equivs (chemdataextractor.nlp.abbrev.AbbreviationDetector attribute) (chemdataextractor.nlp.abbrev.ChemAbbreviationDetector attribute) abbr_max (chemdataextractor.nlp.abbrev.AbbreviationDetector attribute) (chemdataextractor.nlp.abbrev.ChemAbbreviationDetector attribute) abbr_min (chemdataextractor.nlp.abbrev.AbbreviationDetector attribute) (chemdataextractor.nlp.abbrev.ChemAbbreviationDetector attribute) abbreviation_definitions (chemdataextractor.doc.document.Document attribute) (chemdataextractor.doc.element.CaptionedElement attribute) (chemdataextractor.doc.meta.MetaData attribute) (chemdataextractor.doc.text.Cell attribute) (chemdataextractor.doc.text.Sentence attribute) (chemdataextractor.doc.text.Text attribute) abbreviation_detector (chemdataextractor.doc.text.Citation attribute) (chemdataextractor.doc.text.Sentence attribute) (chemdataextractor.doc.text.Text attribute) AbbreviationDetector (class in chemdataextractor.nlp.abbrev) abstract (chemdataextractor.scrape.entity.DocumentEntity attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierHtmlDocument attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierXmlDocument attribute) (chemdataextractor.scrape.pub.nlm.NlmXmlDocument attribute) (chemdataextractor.scrape.pub.rsc.RscHtmlDocument attribute) (chemdataextractor.scrape.pub.rsc.RscSearchDocument attribute) (chemdataextractor.scrape.pub.springer.SpringerHtmlDocument attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute) ACCENTS (in module chemdataextractor.text) accepted_day (chemdataextractor.scrape.pub.nlm.NlmXmlDocument attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute) accepted_month (chemdataextractor.scrape.pub.nlm.NlmXmlDocument attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute) accepted_year (chemdataextractor.scrape.pub.nlm.NlmXmlDocument attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute) AcsHtmlReader (class in chemdataextractor.reader.acs) actions (chemdataextractor.parse.elements.BaseParserElement attribute) add() (chemdataextractor.nlp.lexicon.Lexicon method) add_action() (chemdataextractor.parse.elements.BaseParserElement method)

add_models() (chemdataextractor.doc.document.Document method) (chemdataextractor.doc.element.BaseElement method) add_phrase() (chemdataextractor.relex.cluster.Cluster method) add_tokens() (chemdataextractor.relex.cluster.Cluster static method) AllenNlpWrapperTagger (class in chemdataextractor.nlp.allennlpwrapper) allow_section_phrase (chemdataextractor.parse.base.BaseParser attribute) allow_xpath (chemdataextractor.scrape.clean.Cleaner attribute) And (class in chemdataextractor.parse.elements) Angstrom (class in chemdataextractor.model.units.length) another_label (chemdataextractor.model.model.InteratomicDistance attribute) Any (class in chemdataextractor.parse.elements) APOSTROPHES (in module chemdataextractor.text) apparatus (chemdataextractor.model.model.ElectrochemicalPotential attribute) (chemdataextractor.model.model.FluorescenceLifetime attribute) (chemdataextractor.model.model.IrSpectrum attribute) (chemdataextractor.model.model.MeltingPoint attribute) (chemdataextractor.model.model.NmrSpectrum attribute) (chemdataextractor.model.model.QuantumYield attribute) (chemdataextractor.model.model.UvvisSpectrum attribute) Apparatus (class in chemdataextractor.model.model) append() (chemdataextractor.parse.elements.ParseExpression method) ApPosTagger (class in chemdataextractor.nlp.pos) ApTagger (class in chemdataextractor.nlp.tag) assignment (chemdataextractor.model.model.NmrPeak attribute) attribute (chemdataextractor.scrape.csstranslator.CdeXPathExpr attribute) authors (chemdataextractor.doc.meta.MetaData attribute) (chemdataextractor.scrape.entity.DocumentEntity attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierHtmlDocument attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierXmlDocument attribute) (chemdataextractor.scrape.pub.nlm.NlmXmlDocument attribute) (chemdataextractor.scrape.pub.rsc.RscRssDocument attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute) AutoSentenceParser (class in chemdataextractor.parse.auto) AutoTableParser (class in chemdataextractor.parse.auto) average_weights() (chemdataextractor.nlp.tag.AveragedPerceptron method) AveragedPerceptron (class in chemdataextractor.nlp.tag)

B

base_magnitude (chemdataextractor.model.units.unit.Unit attribute) BaseAutoParser (class in chemdataextractor.parse.auto) BaseDocument (class in chemdataextractor.doc.document) BaseElement (class in chemdataextractor.doc.element) BaseEntity (class in chemdataextractor.scrape.base) BaseEntityProcessor (class in chemdataextractor.scrape.base) BaseField (class in chemdataextractor.scrape.base) BaseFormat (class in chemdataextractor.scrape.base) BaseModel (class in chemdataextractor.model.base) BaseNormalizer (class in chemdataextractor.text.normalize) BaseParser (class in chemdataextractor.parse.base) BaseParserElement (class in chemdataextractor.parse.elements) BaseProcessor (class in chemdataextractor.text.processors) BaseReader (class in chemdataextractor.reader.base) BaseRequester (class in chemdataextractor.scrape.base) BaseScraper (class in chemdataextractor.scrape.base) BaseSentenceParser (class in chemdataextractor.parse.base)

BaseTableParser (class in chemdataextractor.parse.base) BaseTagger (class in chemdataextractor.nlp.tag) BaseText (class in chemdataextractor.doc.text) BaseTokenizer (class in chemdataextractor.nlp.tokenize) BaseType (class in chemdataextractor.model.base) batch_tag() (chemdataextractor.nlp.allennlpwrapper.AllenNlpWrapperTagger method) batch_tag_for_type() (chemdataextractor.nlp.tag.EnsembleTagger method) BertFinetunedCRFCemTagger (class in chemdataextractor.nlp.new_cem) BertWordTokenizer (class in chemdataextractor.nlp.tokenize) BibtexParser (class in chemdataextractor.biblio.bibtex) binding_properties (chemdataextractor.model.base.BaseModel attribute) BLOCK_ELEMENTS (in module chemdataextractor.scrape) bond (chemdataextractor.model.model.IrPeak attribute) BoolField (class in chemdataextractor.scrape.fields) bracket_level() (in module chemdataextractor.text) build() (chemdataextractor.nlp.tag.DictionaryTagger method) (in module chemdataextractor.cli.dict)

C

can_batch_tag() (chemdataextractor.nlp.tag.BaseTagger method) (chemdataextractor.nlp.tag.EnsembleTagger method) can_tag() (chemdataextractor.nlp.tag.BaseTagger method) (chemdataextractor.nlp.tag.EnsembleTagger method) caption (chemdataextractor.scrape.pub.elsevier.ElsevierImage attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierTable attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierXmlImage attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierXmlTable attribute) (chemdataextractor.scrape.pub.nlm.NlmXmlImage attribute) (chemdataextractor.scrape.pub.nlm.NlmXmlTable attribute) (chemdataextractor.scrape.pub.rsc.RscImage attribute) (chemdataextractor.scrape.pub.rsc.RscTable attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlImage attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlTable attribute) Caption (class in chemdataextractor.doc.text) captioned_elements (chemdataextractor.doc.document.Document attribute) CaptionedElement (class in chemdataextractor.doc.element) captions (chemdataextractor.doc.document.Document attribute) case_sensitive (chemdataextractor.nlp.cem.CsDictCemTagger attribute) (chemdataextractor.nlp.tag.DictionaryTagger attribute) cde_tables (chemdataextractor.doc.table.Table attribute) cde_tokensc (in module chemdataextractor.nlp.corpus) CdeXPathExpr (class in chemdataextractor.scrape.csstranslator) Cell (class in chemdataextractor.doc.text) Celsius (class in chemdataextractor.model.units.temperature) cem() (in module chemdataextractor.cli.cem) cem_after_specifier_and_value_phrase (chemdataextractor.parse.template.QuantityModelTemplateParser attribute) cem_before_specifier_and_value_phrase (chemdataextractor.parse.template.QuantityModelTemplateParser attribute) cem_phrase (chemdataextractor.parse.template.QuantityModelTemplateParser attribute) cems (chemdataextractor.doc.document.Document attribute) (chemdataextractor.doc.element.CaptionedElement attribute) (chemdataextractor.doc.meta.MetaData attribute) (chemdataextractor.doc.text.Sentence attribute) (chemdataextractor.doc.text.Text attribute) CemTagger (class in chemdataextractor.nlp.new_cem) Chain (class in chemdataextractor.text.processors) CHAR_REPLACEMENTS (in module chemdataextractor.scrape.pub.elsevier) (in module chemdataextractor.scrape.pub.rsc) ChemAbbreviationDetector (class in chemdataextractor.nlp.abbrev) ChemApPosTagger (class in chemdataextractor.nlp.pos) ChemCrfPosTagger (class in chemdataextractor.nlp.pos) chemdataextractor (module) chemdataextractor.biblio (module) chemdataextractor.biblio.bibtex (module) chemdataextractor.biblio.person (module) chemdataextractor.biblio.xmp (module) chemdataextractor.cli (module) chemdataextractor.cli.cem (module) chemdataextractor.cli.chemdner (module) chemdataextractor.cli.cluster (module) chemdataextractor.cli.config (module) chemdataextractor.cli.data (module) chemdataextractor.cli.dict (module) chemdataextractor.cli.evaluate (module) chemdataextractor.cli.pos (module) chemdataextractor.cli.tokenize (module) chemdataextractor.config (module) chemdataextractor.data (module) chemdataextractor.doc (module) chemdataextractor.doc.document (module) chemdataextractor.doc.element (module) chemdataextractor.doc.figure (module) chemdataextractor.doc.meta (module) chemdataextractor.doc.table (module) chemdataextractor.doc.text (module) chemdataextractor.errors (module) chemdataextractor.eval (module) chemdataextractor.model (module) chemdataextractor.model.base (module) chemdataextractor.model.model (module) chemdataextractor.model.units (module) chemdataextractor.model.units.dimension (module) chemdataextractor.model.units.length (module) chemdataextractor.model.units.mass (module) chemdataextractor.model.units.quantity_model (module) chemdataextractor.model.units.temperature (module) chemdataextractor.model.units.time (module) chemdataextractor.model.units.unit (module) chemdataextractor.nlp (module) chemdataextractor.nlp.abbrev (module) chemdataextractor.nlp.allennlpwrapper (module) chemdataextractor.nlp.cem (module) chemdataextractor.nlp.corpus (module) chemdataextractor.nlp.lexicon (module) chemdataextractor.nlp.new_cem (module) chemdataextractor.nlp.pos (module) chemdataextractor.nlp.tag (module) chemdataextractor.nlp.tokenize (module) chemdataextractor.parse (module) chemdataextractor.parse.actions (module) chemdataextractor.parse.auto (module) chemdataextractor.parse.base (module) chemdataextractor.parse.cem (module) chemdataextractor.parse.common (module) chemdataextractor.parse.context (module) chemdataextractor.parse.elements (module) chemdataextractor.parse.ir (module) chemdataextractor.parse.mp (module) chemdataextractor.parse.nmr (module) chemdataextractor.parse.template (module) chemdataextractor.parse.tg (module) chemdataextractor.parse.uvvis (module) chemdataextractor.reader (module) chemdataextractor.reader.acs (module) chemdataextractor.reader.base (module) chemdataextractor.reader.cssp (module) chemdataextractor.reader.elsevier (module) chemdataextractor.reader.markup (module) chemdataextractor.reader.nlm (module) chemdataextractor.reader.pdf (module) chemdataextractor.reader.plaintext (module) chemdataextractor.reader.rsc (module) chemdataextractor.reader.springer (module) chemdataextractor.reader.uspto (module) chemdataextractor.relex.cluster (module) chemdataextractor.relex.entity (module) chemdataextractor.relex.pattern (module) chemdataextractor.relex.phrase (module) chemdataextractor.relex.relationship (module) chemdataextractor.relex.utils (module) chemdataextractor.scrape (module) chemdataextractor.scrape.base (module) chemdataextractor.scrape.clean (module) chemdataextractor.scrape.csstranslator (module) chemdataextractor.scrape.entity (module) chemdataextractor.scrape.fields (module) chemdataextractor.scrape.pub (module) chemdataextractor.scrape.pub.elsevier (module) chemdataextractor.scrape.pub.nlm (module) chemdataextractor.scrape.pub.rsc (module) chemdataextractor.scrape.pub.springer (module) chemdataextractor.scrape.scraper (module) chemdataextractor.scrape.selector (module) chemdataextractor.text (module) chemdataextractor.text.chem (module) chemdataextractor.text.latex (module) chemdataextractor.text.normalize (module) chemdataextractor.text.processors (module) chemdataextractor.utils (module) ChemDataExtractorError chemdner_cli() (in module chemdataextractor.cli.chemdner) chemdner_training (in module chemdataextractor.nlp.corpus) chemical_definitions (chemdataextractor.doc.element.CaptionedElement attribute) (chemdataextractor.doc.meta.MetaData attribute) (chemdataextractor.doc.text.BaseText attribute) (chemdataextractor.doc.text.Sentence attribute) (chemdataextractor.doc.text.Text attribute) ChemicalLabelParser (class in chemdataextractor.parse.cem) ChemLexicon (class in chemdataextractor.nlp.lexicon) ChemNormalizer (class in chemdataextractor.text.normalize) ChemSentenceTokenizer (class in chemdataextractor.nlp.tokenize) chemspider_id (chemdataextractor.scrape.pub.rsc.RscChemicalMention attribute) ChemWordTokenizer (class in chemdataextractor.nlp.tokenize) CiDictCemTagger (class in chemdataextractor.nlp.cem) Citation (class in chemdataextractor.doc.text) citation_css (chemdataextractor.reader.acs.AcsHtmlReader attribute) (chemdataextractor.reader.cssp.CsspHtmlReader attribute) (chemdataextractor.reader.elsevier.ElsevierXmlReader attribute) (chemdataextractor.reader.markup.LxmlReader attribute) (chemdataextractor.reader.nlm.NlmXmlReader attribute) (chemdataextractor.reader.rsc.RscHtmlReader attribute) (chemdataextractor.reader.springer.SpringerMaterialsHtmlReader attribute) citations (chemdataextractor.doc.document.Document attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierHtmlDocument attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierXmlDocument attribute) clean (in module chemdataextractor.scrape.clean) clean() (in module chemdataextractor.cli.data) clean_abstract (chemdataextractor.scrape.pub.nlm.NlmXmlDocument attribute) (chemdataextractor.scrape.pub.rsc.RscHtmlDocument attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute) clean_acs_html (in module chemdataextractor.reader.acs) clean_caption (chemdataextractor.scrape.pub.nlm.NlmXmlImage attribute) (chemdataextractor.scrape.pub.nlm.NlmXmlTable attribute) (chemdataextractor.scrape.pub.rsc.RscImage attribute) (chemdataextractor.scrape.pub.rsc.RscTable attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlImage attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlTable attribute) clean_headings (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute) clean_html (in module chemdataextractor.scrape.clean) clean_html() (chemdataextractor.scrape.clean.Cleaner method) clean_markup (in module chemdataextractor.scrape.clean) clean_markup() (chemdataextractor.scrape.clean.Cleaner method) clean_paragraphs (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute) clean_src (chemdataextractor.scrape.pub.rsc.RscTable attribute) clean_text (chemdataextractor.scrape.pub.rsc.RscChemicalMention attribute) clean_title (chemdataextractor.scrape.pub.nlm.NlmXmlDocument attribute) (chemdataextractor.scrape.pub.rsc.RscHtmlDocument attribute) (chemdataextractor.scrape.pub.rsc.RscSearchDocument attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute)

Cleaner (class in chemdataextractor.scrape.clean) cleaners (chemdataextractor.reader.acs.AcsHtmlReader attribute) (chemdataextractor.reader.elsevier.ElsevierXmlReader attribute) (chemdataextractor.reader.markup.LxmlReader attribute) (chemdataextractor.reader.nlm.NlmXmlReader attribute) (chemdataextractor.reader.rsc.RscHtmlReader attribute) (chemdataextractor.reader.springer.SpringerHtmlReader attribute) (chemdataextractor.reader.springer.SpringerMaterialsHtmlReader attribute) (chemdataextractor.reader.uspto.UsptoXmlReader attribute) clear() (chemdataextractor.config.Config method) (in module chemdataextractor.cli.config) cli() (in module chemdataextractor.cli) cluster (chemdataextractor.nlp.lexicon.Lexeme attribute) Cluster (class in chemdataextractor.relex.cluster) cluster() (chemdataextractor.nlp.lexicon.Lexicon method) cluster_cli() (in module chemdataextractor.cli.cluster) clusters (chemdataextractor.nlp.cem.CrfCemTagger attribute) (chemdataextractor.nlp.pos.ApPosTagger attribute) (chemdataextractor.nlp.pos.ChemApPosTagger attribute) (chemdataextractor.nlp.pos.ChemCrfPosTagger attribute) (chemdataextractor.nlp.pos.CrfPosTagger attribute) (chemdataextractor.nlp.tag.ApTagger attribute) (chemdataextractor.nlp.tag.CrfTagger attribute) clusters_path (chemdataextractor.nlp.lexicon.ChemLexicon attribute) (chemdataextractor.nlp.lexicon.Lexicon attribute) cn_label (chemdataextractor.model.model.CoordinationNumber attribute) CNLabel (class in chemdataextractor.model.model) coden (chemdataextractor.scrape.pub.nlm.NlmXmlDocument attribute) column_headings (chemdataextractor.scrape.pub.elsevier.ElsevierTable attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierXmlTable attribute) compare() (in module chemdataextractor.cli.evaluate) compound (chemdataextractor.model.model.CNLabel attribute) (chemdataextractor.model.model.CoordinationNumber attribute) (chemdataextractor.model.model.CurieTemperature attribute) (chemdataextractor.model.model.GlassTransition attribute) (chemdataextractor.model.model.InteratomicDistance attribute) (chemdataextractor.model.model.IrSpectrum attribute) (chemdataextractor.model.model.MeltingPoint attribute) (chemdataextractor.model.model.NeelTemperature attribute) (chemdataextractor.model.model.NmrSpectrum attribute) (chemdataextractor.model.model.UvvisSpectrum attribute) Compound (class in chemdataextractor.model.model) CompoundHeadingParser (class in chemdataextractor.parse.cem) CompoundParser (class in chemdataextractor.parse.cem) CompoundTableParser (class in chemdataextractor.parse.cem) concentration (chemdataextractor.model.model.ElectrochemicalPotential attribute) (chemdataextractor.model.model.FluorescenceLifetime attribute) (chemdataextractor.model.model.GlassTransition attribute) (chemdataextractor.model.model.IrSpectrum attribute) (chemdataextractor.model.model.MeltingPoint attribute) (chemdataextractor.model.model.NmrSpectrum attribute) (chemdataextractor.model.model.QuantumYield attribute) (chemdataextractor.model.model.UvvisSpectrum attribute) concentration_units (chemdataextractor.model.model.ElectrochemicalPotential attribute) (chemdataextractor.model.model.FluorescenceLifetime attribute) (chemdataextractor.model.model.GlassTransition attribute) (chemdataextractor.model.model.IrSpectrum attribute) (chemdataextractor.model.model.MeltingPoint attribute) (chemdataextractor.model.model.NmrSpectrum attribute) (chemdataextractor.model.model.QuantumYield attribute) (chemdataextractor.model.model.UvvisSpectrum attribute) Config (class in chemdataextractor.config) config (in module chemdataextractor.config) config_cli() (in module chemdataextractor.cli.config) constituent_dimensions (chemdataextractor.model.units.dimension.Dimension attribute) constituent_units (chemdataextractor.model.units.unit.Unit attribute) construct_category_element() (in module chemdataextractor.parse.auto) construct_label_expression() (chemdataextractor.model.model.Compound method) construct_unit_element() (in module chemdataextractor.parse.auto) construct_yaml_str() (in module chemdataextractor.config) contextual_fulfilled (chemdataextractor.model.base.BaseModel attribute) contextual_range() (chemdataextractor.model.base.BaseModel method) CONTRACTIONS (chemdataextractor.nlp.tokenize.WordTokenizer attribute) CONTROL_RE (in module chemdataextractor.text) CONTROLS (in module chemdataextractor.text) convert_error() (chemdataextractor.model.units.quantity_model.QuantityModel method) convert_error_from_standard() (chemdataextractor.model.units.length.Angstrom method) (chemdataextractor.model.units.length.LengthUnit method) (chemdataextractor.model.units.length.Meter method) (chemdataextractor.model.units.length.Micron method) (chemdataextractor.model.units.length.Mile method) (chemdataextractor.model.units.mass.Gram method) (chemdataextractor.model.units.mass.MassUnit method) (chemdataextractor.model.units.mass.Pound method) (chemdataextractor.model.units.mass.Tonne method) (chemdataextractor.model.units.temperature.Celsius method) (chemdataextractor.model.units.temperature.Fahrenheit method) (chemdataextractor.model.units.temperature.Kelvin method) (chemdataextractor.model.units.temperature.TemperatureUnit method) (chemdataextractor.model.units.time.Day method) (chemdataextractor.model.units.time.Hour method) (chemdataextractor.model.units.time.Minute method) (chemdataextractor.model.units.time.Second method) (chemdataextractor.model.units.time.TimeUnit method) (chemdataextractor.model.units.time.Year method) (chemdataextractor.model.units.unit.DimensionlessUnit method) (chemdataextractor.model.units.unit.Unit method) convert_error_to_standard() (chemdataextractor.model.units.length.Angstrom method) (chemdataextractor.model.units.length.LengthUnit method) (chemdataextractor.model.units.length.Meter method) (chemdataextractor.model.units.length.Micron method) (chemdataextractor.model.units.length.Mile method) (chemdataextractor.model.units.mass.Gram method) (chemdataextractor.model.units.mass.MassUnit method) (chemdataextractor.model.units.mass.Pound method) (chemdataextractor.model.units.mass.Tonne method) (chemdataextractor.model.units.temperature.Celsius method) (chemdataextractor.model.units.temperature.Fahrenheit method) (chemdataextractor.model.units.temperature.Kelvin method) (chemdataextractor.model.units.temperature.TemperatureUnit method) (chemdataextractor.model.units.time.Day method) (chemdataextractor.model.units.time.Hour method) (chemdataextractor.model.units.time.Minute method) (chemdataextractor.model.units.time.Second method) (chemdataextractor.model.units.time.TimeUnit method) (chemdataextractor.model.units.time.Year method) (chemdataextractor.model.units.unit.DimensionlessUnit method) (chemdataextractor.model.units.unit.Unit method) convert_from_standard() (chemdataextractor.model.units.time.Year method) (chemdataextractor.model.units.unit.DimensionlessUnit method) convert_to() (chemdataextractor.model.units.quantity_model.QuantityModel method) convert_to_standard() (chemdataextractor.model.units.quantity_model.QuantityModel method) (chemdataextractor.model.units.time.Year method) (chemdataextractor.model.units.unit.DimensionlessUnit method) convert_value() (chemdataextractor.model.units.quantity_model.QuantityModel method) convert_value_from_standard() (chemdataextractor.model.units.length.Angstrom method) (chemdataextractor.model.units.length.LengthUnit method) (chemdataextractor.model.units.length.Meter method) (chemdataextractor.model.units.length.Micron method) (chemdataextractor.model.units.length.Mile method) (chemdataextractor.model.units.mass.Gram method) (chemdataextractor.model.units.mass.MassUnit method) (chemdataextractor.model.units.mass.Pound method) (chemdataextractor.model.units.mass.Tonne method) (chemdataextractor.model.units.temperature.Celsius method) (chemdataextractor.model.units.temperature.Fahrenheit method) (chemdataextractor.model.units.temperature.Kelvin method) (chemdataextractor.model.units.temperature.TemperatureUnit method) (chemdataextractor.model.units.time.Day method) (chemdataextractor.model.units.time.Hour method) (chemdataextractor.model.units.time.Minute method) (chemdataextractor.model.units.time.Second method) (chemdataextractor.model.units.time.TimeUnit method) (chemdataextractor.model.units.time.Year method) (chemdataextractor.model.units.unit.DimensionlessUnit method) (chemdataextractor.model.units.unit.Unit method) convert_value_to_standard() (chemdataextractor.model.units.length.Angstrom method) (chemdataextractor.model.units.length.LengthUnit method) (chemdataextractor.model.units.length.Meter method) (chemdataextractor.model.units.length.Micron method) (chemdataextractor.model.units.length.Mile method) (chemdataextractor.model.units.mass.Gram method) (chemdataextractor.model.units.mass.MassUnit method) (chemdataextractor.model.units.mass.Pound method) (chemdataextractor.model.units.mass.Tonne method) (chemdataextractor.model.units.temperature.Celsius method) (chemdataextractor.model.units.temperature.Fahrenheit method) (chemdataextractor.model.units.temperature.Kelvin method) (chemdataextractor.model.units.temperature.TemperatureUnit method) (chemdataextractor.model.units.time.Day method) (chemdataextractor.model.units.time.Hour method) (chemdataextractor.model.units.time.Minute method) (chemdataextractor.model.units.time.Second method) (chemdataextractor.model.units.time.TimeUnit method) (chemdataextractor.model.units.time.Year method) (chemdataextractor.model.units.unit.DimensionlessUnit method) (chemdataextractor.model.units.unit.Unit method) coordination_number_label (chemdataextractor.model.model.CNLabel attribute) (chemdataextractor.model.model.CoordinationNumber attribute) CoordinationNumber (class in chemdataextractor.model.model) copy() (chemdataextractor.parse.elements.BaseParserElement method) (chemdataextractor.parse.elements.ParseExpression method) copyright (chemdataextractor.scrape.entity.DocumentEntity attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierHtmlDocument attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierXmlDocument attribute) could_be() (chemdataextractor.biblio.person.PersonName method) coupling (chemdataextractor.model.model.NmrPeak attribute) coupling_units (chemdataextractor.model.model.NmrPeak attribute) create() (chemdataextractor.relex.phrase.Phrase method) create_entities_list() (in module chemdataextractor.parse.auto) create_session() (chemdataextractor.scrape.base.BaseScraper method) CrfCemTagger (class in chemdataextractor.nlp.cem) CrfPosTagger (class in chemdataextractor.nlp.pos) CrfTagger (class in chemdataextractor.nlp.tag) CsDictCemTagger (class in chemdataextractor.nlp.cem) css() (chemdataextractor.scrape.selector.Selector method) CssHTMLTranslator (class in chemdataextractor.scrape.csstranslator) CsspHtmlReader (class in chemdataextractor.reader.cssp) CssXmlTranslator (class in chemdataextractor.scrape.csstranslator) CurieTemperature (class in chemdataextractor.model.model)

D

data (chemdataextractor.doc.meta.MetaData attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierTable attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierXmlTable attribute) data_cli() (in module chemdataextractor.cli.data) date (chemdataextractor.doc.meta.MetaData attribute) DateTimeField (class in chemdataextractor.scrape.fields) Day (class in chemdataextractor.model.units.time) default_download() (chemdataextractor.data.Package method) definitions (chemdataextractor.doc.document.Document attribute) (chemdataextractor.doc.element.CaptionedElement attribute) (chemdataextractor.doc.meta.MetaData attribute) (chemdataextractor.doc.table.Table attribute) (chemdataextractor.doc.text.BaseText attribute) (chemdataextractor.doc.text.Caption attribute) (chemdataextractor.doc.text.Sentence attribute) (chemdataextractor.doc.text.Text attribute) delimiters (chemdataextractor.nlp.tag.DictionaryTagger attribute) deserialize() (chemdataextractor.model.base.BaseModel class method) detect() (chemdataextractor.nlp.abbrev.AbbreviationDetector method) (chemdataextractor.reader.acs.AcsHtmlReader method) (chemdataextractor.reader.base.BaseReader method) (chemdataextractor.reader.cssp.CsspHtmlReader method) (chemdataextractor.reader.elsevier.ElsevierXmlReader method) (chemdataextractor.reader.markup.HtmlReader method) (chemdataextractor.reader.markup.XmlReader method) (chemdataextractor.reader.nlm.NlmXmlReader method) (chemdataextractor.reader.pdf.PdfReader method) (chemdataextractor.reader.plaintext.PlainTextReader method) (chemdataextractor.reader.rsc.RscHtmlReader method) (chemdataextractor.reader.springer.SpringerHtmlReader method) (chemdataextractor.reader.springer.SpringerMaterialsHtmlReader method) (chemdataextractor.reader.uspto.UsptoXmlReader method) detect_spans() (chemdataextractor.nlp.abbrev.AbbreviationDetector method)

dict_cli() (in module chemdataextractor.cli.dict) DictionaryTagger (class in chemdataextractor.nlp.tag) digit_count (chemdataextractor.nlp.lexicon.Lexeme attribute) digit_count() (chemdataextractor.nlp.lexicon.Lexicon method) Dimension (class in chemdataextractor.model.units.dimension) Dimensionless (class in chemdataextractor.model.units.dimension) DimensionlessModel (class in chemdataextractor.model.units.quantity_model) DimensionlessUnit (class in chemdataextractor.model.units.unit) dimensions (chemdataextractor.model.units.length.LengthModel attribute) (chemdataextractor.model.units.mass.MassModel attribute) (chemdataextractor.model.units.quantity_model.DimensionlessModel attribute) (chemdataextractor.model.units.quantity_model.QuantityModel attribute) (chemdataextractor.model.units.temperature.TemperatureModel attribute) (chemdataextractor.model.units.time.TimeModel attribute) Discard (class in chemdataextractor.text.processors) do_not_split (chemdataextractor.nlp.tokenize.BertWordTokenizer attribute) do_not_split_if_in_num (chemdataextractor.nlp.tokenize.BertWordTokenizer attribute) document (chemdataextractor.doc.element.BaseElement attribute) (chemdataextractor.doc.element.CaptionedElement attribute) Document (class in chemdataextractor.doc.document) DocumentEntity (class in chemdataextractor.scrape.entity) doi (chemdataextractor.doc.meta.MetaData attribute) (chemdataextractor.scrape.entity.DocumentEntity attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierHtmlDocument attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierXmlDocument attribute) (chemdataextractor.scrape.pub.nlm.NlmXmlDocument attribute) (chemdataextractor.scrape.pub.rsc.RscRssDocument attribute) (chemdataextractor.scrape.pub.rsc.RscSearchDocument attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute) DOI_RE (in module chemdataextractor.text) DOUBLE_QUOTES (in module chemdataextractor.text) download() (chemdataextractor.data.Package method) (in module chemdataextractor.cli.data)

E

ElectrochemicalPotential (class in chemdataextractor.model.model) elements (chemdataextractor.doc.document.BaseDocument attribute) (chemdataextractor.doc.document.Document attribute) (chemdataextractor.doc.element.BaseElement attribute) (chemdataextractor.doc.element.CaptionedElement attribute) (chemdataextractor.doc.table.Table attribute) (chemdataextractor.doc.text.Cell attribute) (chemdataextractor.doc.text.Text attribute) els_xml_whitespace() (in module chemdataextractor.reader.elsevier) elsevier_substitute (in module chemdataextractor.scrape.pub.elsevier) ElsevierHtmlDocument (class in chemdataextractor.scrape.pub.elsevier) ElsevierHtmlScraper (class in chemdataextractor.scrape.pub.elsevier) ElsevierImage (class in chemdataextractor.scrape.pub.elsevier) ElsevierSearchDocument (class in chemdataextractor.scrape.pub.elsevier) ElsevierSearchScraper (class in chemdataextractor.scrape.pub.elsevier) ElsevierTable (class in chemdataextractor.scrape.pub.elsevier) ElsevierTableData (class in chemdataextractor.scrape.pub.elsevier) ElsevierXmlDocument (class in chemdataextractor.scrape.pub.elsevier) ElsevierXmlImage (class in chemdataextractor.scrape.pub.elsevier) ElsevierXmlReader (class in chemdataextractor.reader.elsevier) ElsevierXmlTable (class in chemdataextractor.scrape.pub.elsevier) ElsevierXmlTableData (class in chemdataextractor.scrape.pub.elsevier) email (chemdataextractor.scrape.pub.nlm.NlmXmlAuthor attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlAuthor attribute) EMAIL_RE (in module chemdataextractor.text) end (chemdataextractor.doc.text.Sentence attribute) (chemdataextractor.doc.text.Span attribute) End (class in chemdataextractor.parse.elements) EnsembleTagger (class in chemdataextractor.nlp.tag) ensure_dir() (in module chemdataextractor.utils) entities (chemdataextractor.parse.cem.CompoundTableParser attribute) entity (chemdataextractor.nlp.tag.DictionaryTagger attribute) (chemdataextractor.scrape.base.BaseScraper attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierHtmlScraper attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierSearchScraper attribute) (chemdataextractor.scrape.pub.rsc.RscHtmlScraper attribute) (chemdataextractor.scrape.pub.rsc.RscLandingScraper attribute) (chemdataextractor.scrape.pub.rsc.RscRssScraper attribute) (chemdataextractor.scrape.pub.rsc.RscSearchScraper attribute)

Entity (class in chemdataextractor.relex.entity) (class in chemdataextractor.scrape.entity) EntityField (class in chemdataextractor.scrape.fields) EntityList (class in chemdataextractor.scrape.entity) EntityMeta (class in chemdataextractor.scrape.base) error (chemdataextractor.model.units.quantity_model.QuantityModel attribute) eval_document() (in module chemdataextractor.cli.evaluate) evaluate() (chemdataextractor.nlp.tag.BaseTagger method) (in module chemdataextractor.cli.evaluate) (in module chemdataextractor.cli.pos) evaluate_all() (in module chemdataextractor.cli.pos) evaluate_perceptron() (in module chemdataextractor.cli.pos) Every (class in chemdataextractor.parse.elements) ExcessNormalizer (class in chemdataextractor.text.normalize) expression (chemdataextractor.model.model.CurieTemperature attribute) (chemdataextractor.model.model.NeelTemperature attribute) extinction (chemdataextractor.model.model.UvvisPeak attribute) extinction_units (chemdataextractor.model.model.UvvisPeak attribute) extract() (chemdataextractor.scrape.selector.Selector method) (chemdataextractor.scrape.selector.SelectorList method) (in module chemdataextractor.cli) extract_cas() (in module chemdataextractor.text.chem) extract_emails() (in module chemdataextractor.text.processors) extract_error() (chemdataextractor.parse.base.BaseParser method) extract_first() (chemdataextractor.scrape.selector.SelectorList method) extract_inchikeys() (in module chemdataextractor.text.chem) extract_inchis() (in module chemdataextractor.text.chem) extract_smiles() (in module chemdataextractor.text.chem) extract_units() (chemdataextractor.parse.base.BaseParser method) (in module chemdataextractor.parse.ir) extract_value() (chemdataextractor.parse.base.BaseParser method)

F

Fahrenheit (class in chemdataextractor.model.units.temperature) fields (chemdataextractor.model.base.BaseModel attribute) (chemdataextractor.model.model.Apparatus attribute) (chemdataextractor.model.model.CNLabel attribute) (chemdataextractor.model.model.Compound attribute) (chemdataextractor.model.model.CoordinationNumber attribute) (chemdataextractor.model.model.CurieTemperature attribute) (chemdataextractor.model.model.ElectrochemicalPotential attribute) (chemdataextractor.model.model.FluorescenceLifetime attribute) (chemdataextractor.model.model.GlassTransition attribute) (chemdataextractor.model.model.InteratomicDistance attribute) (chemdataextractor.model.model.IrPeak attribute) (chemdataextractor.model.model.IrSpectrum attribute) (chemdataextractor.model.model.MeltingPoint attribute) (chemdataextractor.model.model.NeelTemperature attribute) (chemdataextractor.model.model.NmrPeak attribute) (chemdataextractor.model.model.NmrSpectrum attribute) (chemdataextractor.model.model.QuantumYield attribute) (chemdataextractor.model.model.UvvisPeak attribute) (chemdataextractor.model.model.UvvisSpectrum attribute) (chemdataextractor.model.units.length.LengthModel attribute) (chemdataextractor.model.units.mass.MassModel attribute) (chemdataextractor.model.units.quantity_model.DimensionlessModel attribute) (chemdataextractor.model.units.quantity_model.QuantityModel attribute) (chemdataextractor.model.units.temperature.TemperatureModel attribute) (chemdataextractor.model.units.time.TimeModel attribute) (chemdataextractor.scrape.entity.DocumentEntity attribute) (chemdataextractor.scrape.entity.Entity attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierHtmlDocument attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierImage attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierSearchDocument attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierTable attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierTableData attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierXmlDocument attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierXmlImage attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierXmlTable attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierXmlTableData attribute) (chemdataextractor.scrape.pub.nlm.NlmXmlAuthor attribute) (chemdataextractor.scrape.pub.nlm.NlmXmlDocument attribute) (chemdataextractor.scrape.pub.nlm.NlmXmlImage attribute) (chemdataextractor.scrape.pub.nlm.NlmXmlTable attribute) (chemdataextractor.scrape.pub.rsc.RscChemicalMention attribute) (chemdataextractor.scrape.pub.rsc.RscHtmlDocument attribute) (chemdataextractor.scrape.pub.rsc.RscImage attribute) (chemdataextractor.scrape.pub.rsc.RscLandingDocument attribute) (chemdataextractor.scrape.pub.rsc.RscLandingSupplement attribute) (chemdataextractor.scrape.pub.rsc.RscRssDocument attribute) (chemdataextractor.scrape.pub.rsc.RscSearchDocument attribute) (chemdataextractor.scrape.pub.rsc.RscTable attribute) (chemdataextractor.scrape.pub.springer.SpringerHtmlDocument attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlAuthor attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlImage attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlTable attribute) Figure (class in chemdataextractor.doc.figure) figure_caption_css (chemdataextractor.reader.acs.AcsHtmlReader attribute) (chemdataextractor.reader.elsevier.ElsevierXmlReader attribute) (chemdataextractor.reader.markup.LxmlReader attribute) (chemdataextractor.reader.nlm.NlmXmlReader attribute) (chemdataextractor.reader.rsc.RscHtmlReader attribute) (chemdataextractor.reader.springer.SpringerHtmlReader attribute)

figure_css (chemdataextractor.reader.acs.AcsHtmlReader attribute) (chemdataextractor.reader.elsevier.ElsevierXmlReader attribute) (chemdataextractor.reader.markup.LxmlReader attribute) (chemdataextractor.reader.nlm.NlmXmlReader attribute) (chemdataextractor.reader.rsc.RscHtmlReader attribute) (chemdataextractor.reader.springer.SpringerHtmlReader attribute) figure_download_link_css (chemdataextractor.reader.elsevier.ElsevierXmlReader attribute) (chemdataextractor.reader.markup.LxmlReader attribute) (chemdataextractor.reader.rsc.RscHtmlReader attribute) figure_label_css (chemdataextractor.reader.elsevier.ElsevierXmlReader attribute) (chemdataextractor.reader.markup.LxmlReader attribute) (chemdataextractor.reader.rsc.RscHtmlReader attribute) (chemdataextractor.reader.springer.SpringerHtmlReader attribute) figures (chemdataextractor.doc.document.Document attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierHtmlDocument attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierXmlDocument attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute) finalize_doi() (chemdataextractor.scrape.pub.rsc.RscRssDocument method) find_data() (in module chemdataextractor.data) FineWordTokenizer (class in chemdataextractor.nlp.tokenize) first (chemdataextractor.nlp.lexicon.Lexeme attribute) First (class in chemdataextractor.parse.elements) first() (chemdataextractor.nlp.lexicon.Lexicon method) (in module chemdataextractor.utils) firstname (chemdataextractor.scrape.pub.springer.SpringerXmlAuthor attribute) firstpage (chemdataextractor.doc.meta.MetaData attribute) (chemdataextractor.scrape.entity.DocumentEntity attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierXmlDocument attribute) (chemdataextractor.scrape.pub.nlm.NlmXmlDocument attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute) fix_elsevier_xml_whitespace() (in module chemdataextractor.reader.elsevier) fix_nmr_peak_whitespace_error() (in module chemdataextractor.parse.nmr) fix_springer_table_whitespace() (in module chemdataextractor.reader.springer) fix_whitespace (chemdataextractor.scrape.clean.Cleaner attribute) fix_whitespace() (in module chemdataextractor.parse.actions) flatten() (chemdataextractor.model.base.BaseModel class method) (in module chemdataextractor.parse.actions) (in module chemdataextractor.utils) FloatField (class in chemdataextractor.scrape.fields) floats() (in module chemdataextractor.text.processors) FloatType (class in chemdataextractor.model.base) FluorescenceLifetime (class in chemdataextractor.model.model) FollowedBy (class in chemdataextractor.parse.elements) Footnote (class in chemdataextractor.doc.text) footnotes (chemdataextractor.doc.document.Document attribute) frequency (chemdataextractor.model.model.NmrSpectrum attribute) frequency_units (chemdataextractor.model.model.NmrSpectrum attribute) from_file() (chemdataextractor.doc.document.Document class method) from_html() (chemdataextractor.scrape.selector.Selector class method) from_html_text() (chemdataextractor.scrape.selector.Selector class method) from_response() (chemdataextractor.scrape.selector.Selector class method) from_string() (chemdataextractor.doc.document.Document class method) from_tdecell() (chemdataextractor.doc.text.Cell class method) from_text() (chemdataextractor.scrape.selector.Selector class method) from_xml() (chemdataextractor.scrape.selector.Selector class method) from_xml_text() (chemdataextractor.scrape.selector.Selector class method) from_xpath() (chemdataextractor.scrape.csstranslator.CdeXPathExpr class method) full_subsentence (chemdataextractor.doc.text.Sentence attribute) fullname (chemdataextractor.biblio.person.PersonName attribute)

G

generate_cde_parse_expression() (chemdataextractor.relex.pattern.Pattern method) genia_evaluation (in module chemdataextractor.nlp.corpus) genia_training (in module chemdataextractor.nlp.corpus) get() (chemdataextractor.model.base.BaseModel method) (in module chemdataextractor.cli.config) get_additional_regex() (chemdataextractor.nlp.tokenize.ChemWordTokenizer method) (chemdataextractor.nlp.tokenize.WordTokenizer method) get_confidence() (chemdataextractor.model.base.BaseModel method) get_data_dir() (in module chemdataextractor.data) get_element_with_id() (chemdataextractor.doc.document.Document method) get_encoding() (in module chemdataextractor.text) get_ids() (in module chemdataextractor.cli.evaluate) get_labels() (in module chemdataextractor.cli.evaluate) get_names() (in module chemdataextractor.cli.evaluate) get_property_apparatus() (in module chemdataextractor.cli.evaluate) get_property_core() (in module chemdataextractor.cli.evaluate) get_property_full() (in module chemdataextractor.cli.evaluate) get_property_solvent() (in module chemdataextractor.cli.evaluate) get_property_subject() (in module chemdataextractor.cli.evaluate) get_property_temperature() (in module chemdataextractor.cli.evaluate)

get_property_units() (in module chemdataextractor.cli.evaluate) get_property_value() (in module chemdataextractor.cli.evaluate) get_relations() (chemdataextractor.relex.cluster.Cluster method) get_roots() (chemdataextractor.scrape.base.BaseScraper method) get_sentences() (chemdataextractor.nlp.tokenize.SentenceTokenizer method) get_spectra_apparatus() (in module chemdataextractor.cli.evaluate) get_spectra_core() (in module chemdataextractor.cli.evaluate) get_spectra_full() (in module chemdataextractor.cli.evaluate) get_spectra_peaks() (in module chemdataextractor.cli.evaluate) get_spectra_solvent() (in module chemdataextractor.cli.evaluate) get_spectra_subject() (in module chemdataextractor.cli.evaluate) get_spectra_temp() (in module chemdataextractor.cli.evaluate) get_spectra_type() (in module chemdataextractor.cli.evaluate) get_word_tokens() (chemdataextractor.nlp.tokenize.WordTokenizer method) GetRequester (class in chemdataextractor.scrape.scraper) givennames (chemdataextractor.scrape.pub.nlm.NlmXmlAuthor attribute) GlassTransition (class in chemdataextractor.model.model) Gram (class in chemdataextractor.model.units.mass) GREEK (in module chemdataextractor.text) GREEK_WORDS (in module chemdataextractor.text) Group (class in chemdataextractor.parse.elements)

H

H (in module chemdataextractor.parse.elements) handle_additional_regex() (chemdataextractor.nlp.tokenize.WordTokenizer method) Heading (class in chemdataextractor.doc.text) heading_css (chemdataextractor.reader.acs.AcsHtmlReader attribute) (chemdataextractor.reader.cssp.CsspHtmlReader attribute) (chemdataextractor.reader.elsevier.ElsevierXmlReader attribute) (chemdataextractor.reader.markup.LxmlReader attribute) (chemdataextractor.reader.nlm.NlmXmlReader attribute) (chemdataextractor.reader.rsc.RscHtmlReader attribute) (chemdataextractor.reader.springer.SpringerHtmlReader attribute) (chemdataextractor.reader.springer.SpringerMaterialsHtmlReader attribute) (chemdataextractor.reader.uspto.UsptoXmlReader attribute) headings (chemdataextractor.doc.document.Document attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierHtmlDocument attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierXmlDocument attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute)

Hide (class in chemdataextractor.parse.elements) hide() (chemdataextractor.parse.elements.BaseParserElement method) (chemdataextractor.parse.elements.Hide method) Hour (class in chemdataextractor.model.units.time) html_url (chemdataextractor.doc.meta.MetaData attribute) (chemdataextractor.scrape.entity.DocumentEntity attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierHtmlDocument attribute) (chemdataextractor.scrape.pub.rsc.RscHtmlDocument attribute) (chemdataextractor.scrape.pub.rsc.RscSearchDocument attribute) HtmlFormat (class in chemdataextractor.scrape.scraper) HtmlReader (class in chemdataextractor.reader.markup) HYPHENS (in module chemdataextractor.text)

I

I (in module chemdataextractor.parse.elements) ignore_css (chemdataextractor.reader.acs.AcsHtmlReader attribute) (chemdataextractor.reader.elsevier.ElsevierXmlReader attribute) (chemdataextractor.reader.markup.LxmlReader attribute) (chemdataextractor.reader.nlm.NlmXmlReader attribute) (chemdataextractor.reader.rsc.RscHtmlReader attribute) (chemdataextractor.reader.springer.SpringerHtmlReader attribute) (chemdataextractor.reader.springer.SpringerMaterialsHtmlReader attribute) (chemdataextractor.reader.uspto.UsptoXmlReader attribute) IGNORE_PREFIX (in module chemdataextractor.nlp.cem) IGNORE_SUFFIX (in module chemdataextractor.nlp.cem) image_url (chemdataextractor.scrape.pub.elsevier.ElsevierImage attribute) inchi (chemdataextractor.scrape.pub.rsc.RscChemicalMention attribute) indexers (chemdataextractor.nlp.allennlpwrapper.AllenNlpWrapperTagger attribute) (chemdataextractor.nlp.new_cem.BertFinetunedCRFCemTagger attribute) InferredProperty (class in chemdataextractor.model.base) inline_elements (chemdataextractor.reader.markup.LxmlReader attribute) (chemdataextractor.reader.nlm.NlmXmlReader attribute) (chemdataextractor.reader.uspto.UsptoXmlReader attribute) INLINE_ELEMENTS (in module chemdataextractor.scrape) insert() (chemdataextractor.model.base.ModelList method) intensity (chemdataextractor.model.model.NmrPeak attribute) InteratomicDistance (class in chemdataextractor.model.model) interpret() (chemdataextractor.parse.auto.BaseAutoParser method) (chemdataextractor.parse.base.BaseParser method) (chemdataextractor.parse.cem.ChemicalLabelParser method) (chemdataextractor.parse.cem.CompoundHeadingParser method) (chemdataextractor.parse.cem.CompoundParser method) (chemdataextractor.parse.cem.CompoundTableParser method) (chemdataextractor.parse.ir.IrParser method) (chemdataextractor.parse.mp.MpParser method) (chemdataextractor.parse.nmr.NmrParser method) (chemdataextractor.parse.template.MultiQuantityModelTemplateParser method) (chemdataextractor.parse.tg.TgParser method) (chemdataextractor.parse.uvvis.UvvisParser method) interpret_multi_entity_1() (chemdataextractor.parse.template.MultiQuantityModelTemplateParser method) interpret_multi_entity_2() (chemdataextractor.parse.template.MultiQuantityModelTemplateParser method) interpret_multi_entity_3() (chemdataextractor.parse.template.MultiQuantityModelTemplateParser method) interpret_multi_entity_4() (chemdataextractor.parse.template.MultiQuantityModelTemplateParser method) interpret_multi_entity_5() (chemdataextractor.parse.template.MultiQuantityModelTemplateParser method) IntField (class in chemdataextractor.scrape.fields) IrParser (class in chemdataextractor.parse.ir) IrPeak (class in chemdataextractor.model.model) IrSpectrum (class in chemdataextractor.model.model) is_alpha (chemdataextractor.nlp.lexicon.Lexeme attribute)

is_alpha() (chemdataextractor.nlp.lexicon.Lexicon method) is_ascii (chemdataextractor.nlp.lexicon.Lexeme attribute) is_ascii() (chemdataextractor.nlp.lexicon.Lexicon method) (in module chemdataextractor.text) is_digit (chemdataextractor.nlp.lexicon.Lexeme attribute) is_digit() (chemdataextractor.nlp.lexicon.Lexicon method) is_empty (chemdataextractor.model.base.BaseModel attribute) is_empty() (chemdataextractor.model.base.BaseType method) (chemdataextractor.model.base.FloatType method) (chemdataextractor.model.base.InferredProperty method) (chemdataextractor.model.base.ListType method) (chemdataextractor.model.base.ModelType method) (chemdataextractor.model.base.SetType method) (chemdataextractor.model.base.StringType method) (chemdataextractor.model.units.unit.UnitType method) is_equal() (chemdataextractor.model.units.quantity_model.QuantityModel method) is_hyphenated (chemdataextractor.nlp.lexicon.Lexeme attribute) is_hyphenated() (chemdataextractor.nlp.lexicon.Lexicon method) is_id_only (chemdataextractor.model.model.Compound attribute) is_lower (chemdataextractor.nlp.lexicon.Lexeme attribute) is_lower() (chemdataextractor.nlp.lexicon.Lexicon method) is_punct (chemdataextractor.nlp.lexicon.Lexeme attribute) is_punct() (chemdataextractor.nlp.lexicon.Lexicon method) (in module chemdataextractor.text) is_subset() (chemdataextractor.model.base.BaseModel method) is_superset() (chemdataextractor.model.base.BaseModel method) (chemdataextractor.model.units.quantity_model.QuantityModel method) is_title (chemdataextractor.nlp.lexicon.Lexeme attribute) is_title() (chemdataextractor.nlp.lexicon.Lexicon method) is_unidentified (chemdataextractor.doc.meta.MetaData attribute) (chemdataextractor.model.base.BaseModel attribute) (chemdataextractor.model.model.Compound attribute) is_upper (chemdataextractor.nlp.lexicon.Lexeme attribute) is_upper() (chemdataextractor.nlp.lexicon.Lexicon method) is_valid() (chemdataextractor.relex.relationship.Relation method) issn (chemdataextractor.scrape.entity.DocumentEntity attribute) (chemdataextractor.scrape.pub.nlm.NlmXmlDocument attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute) ISSN_RE (in module chemdataextractor.text) issue (chemdataextractor.doc.meta.MetaData attribute) (chemdataextractor.scrape.entity.DocumentEntity attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierXmlDocument attribute) (chemdataextractor.scrape.pub.nlm.NlmXmlDocument attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute) items() (chemdataextractor.model.base.BaseModel method) IWord (class in chemdataextractor.parse.elements)

J

join() (chemdataextractor.scrape.csstranslator.CdeXPathExpr method) (in module chemdataextractor.parse.actions) join_rsc_table_captions() (in module chemdataextractor.reader.rsc) journal (chemdataextractor.doc.meta.MetaData attribute) (chemdataextractor.scrape.entity.DocumentEntity attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierHtmlDocument attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierXmlDocument attribute) (chemdataextractor.scrape.pub.rsc.RscSearchDocument attribute) (chemdataextractor.scrape.pub.springer.SpringerHtmlDocument attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute)

journal_abbreviation (chemdataextractor.scrape.pub.nlm.NlmXmlDocument attribute) journal_title (chemdataextractor.scrape.pub.nlm.NlmXmlDocument attribute) json (chemdataextractor.biblio.bibtex.BibtexParser attribute)

K

Kelvin (class in chemdataextractor.model.units.temperature) keys() (chemdataextractor.model.base.BaseModel method)

kill_xpath (chemdataextractor.scrape.clean.Cleaner attribute) KnuthMorrisPratt() (in module chemdataextractor.relex.utils)

L

label (chemdataextractor.scrape.pub.elsevier.ElsevierXmlImage attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierXmlTable attribute) (chemdataextractor.scrape.pub.nlm.NlmXmlImage attribute) (chemdataextractor.scrape.pub.nlm.NlmXmlTable attribute) (chemdataextractor.scrape.pub.rsc.RscImage attribute) (chemdataextractor.scrape.pub.rsc.RscTable attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlImage attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlTable attribute) label_Juraj (chemdataextractor.model.model.CNLabel attribute) label_type (chemdataextractor.nlp.cem.LegacyCemTagger attribute) labels (chemdataextractor.model.model.Compound attribute) LAdd (class in chemdataextractor.text.processors) landing_url (chemdataextractor.scrape.entity.DocumentEntity attribute) (chemdataextractor.scrape.pub.rsc.RscHtmlDocument attribute) (chemdataextractor.scrape.pub.rsc.RscRssDocument attribute) (chemdataextractor.scrape.pub.rsc.RscSearchDocument attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute) language (chemdataextractor.scrape.entity.DocumentEntity attribute) lastname (chemdataextractor.scrape.pub.nlm.NlmXmlAuthor attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlAuthor attribute) lastpage (chemdataextractor.doc.meta.MetaData attribute) (chemdataextractor.scrape.entity.DocumentEntity attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierXmlDocument attribute) (chemdataextractor.scrape.pub.nlm.NlmXmlDocument attribute) latex_to_unicode() (in module chemdataextractor.text.latex) LazyCorpusLoader (class in chemdataextractor.nlp.corpus) legacy_pos_tag (chemdataextractor.doc.text.RichToken attribute) legacy_tag() (chemdataextractor.nlp.cem.CrfCemTagger method) (chemdataextractor.nlp.cem.LegacyCemTagger method) (chemdataextractor.nlp.tag.ApTagger method) (chemdataextractor.nlp.tag.CrfTagger method) (chemdataextractor.nlp.tag.DictionaryTagger method) LegacyCemTagger (class in chemdataextractor.nlp.cem) length (chemdataextractor.doc.text.Span attribute) (chemdataextractor.nlp.lexicon.Lexeme attribute) Length (class in chemdataextractor.model.units.length) length() (chemdataextractor.nlp.lexicon.Lexicon method) LengthModel (class in chemdataextractor.model.units.length) LengthUnit (class in chemdataextractor.model.units.length) levenshtein() (in module chemdataextractor.text) lex (chemdataextractor.doc.text.Token attribute) Lexeme (class in chemdataextractor.nlp.lexicon) lexicon (chemdataextractor.doc.text.BaseText attribute) (chemdataextractor.doc.text.Sentence attribute) (chemdataextractor.doc.text.Text attribute) (chemdataextractor.doc.text.Token attribute) (chemdataextractor.nlp.cem.CiDictCemTagger attribute) (chemdataextractor.nlp.cem.CrfCemTagger attribute) (chemdataextractor.nlp.cem.CsDictCemTagger attribute) (chemdataextractor.nlp.cem.LegacyCemTagger attribute) (chemdataextractor.nlp.pos.ChemApPosTagger attribute) (chemdataextractor.nlp.pos.ChemCrfPosTagger attribute) (chemdataextractor.nlp.tag.ApTagger attribute) (chemdataextractor.nlp.tag.CrfTagger attribute) (chemdataextractor.nlp.tag.DictionaryTagger attribute) (chemdataextractor.nlp.tag.RegexTagger attribute)

Lexicon (class in chemdataextractor.nlp.lexicon) license (chemdataextractor.scrape.entity.DocumentEntity attribute) (chemdataextractor.scrape.pub.nlm.NlmXmlDocument attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute) like_number (chemdataextractor.nlp.lexicon.Lexeme attribute) like_number() (chemdataextractor.nlp.lexicon.Lexicon method) (in module chemdataextractor.text) like_url (chemdataextractor.nlp.lexicon.Lexeme attribute) like_url() (chemdataextractor.nlp.lexicon.Lexicon method) (in module chemdataextractor.text) list() (in module chemdataextractor.cli.config) (in module chemdataextractor.cli.data) list_of_cems (chemdataextractor.parse.template.MultiQuantityModelTemplateParser attribute) list_of_properties (chemdataextractor.parse.template.MultiQuantityModelTemplateParser attribute) list_of_values (chemdataextractor.parse.template.MultiQuantityModelTemplateParser attribute) ListType (class in chemdataextractor.model.base) load() (chemdataextractor.nlp.tag.ApTagger method) (chemdataextractor.nlp.tag.AveragedPerceptron method) (chemdataextractor.nlp.tag.CrfTagger method) (chemdataextractor.nlp.tag.DictionaryTagger method) (in module chemdataextractor.cli.cluster) load_model() (in module chemdataextractor.data) local_exists() (chemdataextractor.data.Package method) local_path (chemdataextractor.data.Package attribute) lower (chemdataextractor.nlp.lexicon.Lexeme attribute) lower() (chemdataextractor.nlp.lexicon.Lexicon method) lower_count (chemdataextractor.nlp.lexicon.Lexeme attribute) lower_count() (chemdataextractor.nlp.lexicon.Lexicon method) LStrip (class in chemdataextractor.text.processors) LxmlReader (class in chemdataextractor.reader.markup)

M

make_request() (chemdataextractor.scrape.base.BaseRequester method) (chemdataextractor.scrape.base.BaseScraper method) (chemdataextractor.scrape.pub.elsevier.ElsevierSearchScraper method) (chemdataextractor.scrape.scraper.GetRequester method) (chemdataextractor.scrape.scraper.PostRequester method) Mass (class in chemdataextractor.model.units.mass) MassModel (class in chemdataextractor.model.units.mass) MassUnit (class in chemdataextractor.model.units.mass) match() (in module chemdataextractor.relex.utils) match_dimensions_of() (in module chemdataextractor.parse.auto) match_score() (in module chemdataextractor.relex.utils) medpost (in module chemdataextractor.nlp.corpus) medpost_evaluation (in module chemdataextractor.nlp.corpus) medpost_training (in module chemdataextractor.nlp.corpus) MeltingPoint (class in chemdataextractor.model.model) memoize() (in module chemdataextractor.utils) memoized_property() (in module chemdataextractor.utils) merge() (chemdataextractor.model.model.Compound method) (in module chemdataextractor.parse.actions) merge_all() (chemdataextractor.model.base.BaseModel method) merge_confidence() (chemdataextractor.model.base.BaseModel method) merge_contextual() (chemdataextractor.model.base.BaseModel method) metadata (chemdataextractor.biblio.bibtex.BibtexParser attribute) (chemdataextractor.doc.document.Document attribute) MetaData (class in chemdataextractor.doc.meta) metadata_author_css (chemdataextractor.reader.elsevier.ElsevierXmlReader attribute) (chemdataextractor.reader.markup.LxmlReader attribute) metadata_css (chemdataextractor.reader.elsevier.ElsevierXmlReader attribute) (chemdataextractor.reader.markup.LxmlReader attribute) metadata_date_css (chemdataextractor.reader.elsevier.ElsevierXmlReader attribute) (chemdataextractor.reader.markup.LxmlReader attribute) metadata_doi_css (chemdataextractor.reader.elsevier.ElsevierXmlReader attribute) (chemdataextractor.reader.markup.LxmlReader attribute) metadata_firstpage_css (chemdataextractor.reader.elsevier.ElsevierXmlReader attribute) (chemdataextractor.reader.markup.LxmlReader attribute) metadata_html_url_css (chemdataextractor.reader.markup.LxmlReader attribute) metadata_issue_css (chemdataextractor.reader.elsevier.ElsevierXmlReader attribute) (chemdataextractor.reader.markup.LxmlReader attribute) metadata_journal_css (chemdataextractor.reader.elsevier.ElsevierXmlReader attribute) (chemdataextractor.reader.markup.LxmlReader attribute) metadata_language_css (chemdataextractor.reader.markup.LxmlReader attribute) metadata_lastpage_css (chemdataextractor.reader.elsevier.ElsevierXmlReader attribute) (chemdataextractor.reader.markup.LxmlReader attribute) metadata_pdf_url_css (chemdataextractor.reader.markup.LxmlReader attribute) metadata_pii_css (chemdataextractor.reader.elsevier.ElsevierXmlReader attribute) metadata_publisher_css (chemdataextractor.reader.elsevier.ElsevierXmlReader attribute) (chemdataextractor.reader.markup.LxmlReader attribute)

metadata_title_css (chemdataextractor.reader.elsevier.ElsevierXmlReader attribute) (chemdataextractor.reader.markup.LxmlReader attribute) metadata_volume_css (chemdataextractor.reader.elsevier.ElsevierXmlReader attribute) (chemdataextractor.reader.markup.LxmlReader attribute) MetaUnit (class in chemdataextractor.model.units.unit) Meter (class in chemdataextractor.model.units.length) method (chemdataextractor.model.model.GlassTransition attribute) Micron (class in chemdataextractor.model.units.length) middlename (chemdataextractor.scrape.pub.springer.SpringerXmlAuthor attribute) Mile (class in chemdataextractor.model.units.length) MINUSES (in module chemdataextractor.text) Minute (class in chemdataextractor.model.units.time) mode_rows() (in module chemdataextractor.relex.utils) model (chemdataextractor.nlp.allennlpwrapper.AllenNlpWrapperTagger attribute) (chemdataextractor.nlp.cem.CiDictCemTagger attribute) (chemdataextractor.nlp.cem.CrfCemTagger attribute) (chemdataextractor.nlp.cem.CsDictCemTagger attribute) (chemdataextractor.nlp.new_cem.BertFinetunedCRFCemTagger attribute) (chemdataextractor.nlp.pos.ApPosTagger attribute) (chemdataextractor.nlp.pos.ChemApPosTagger attribute) (chemdataextractor.nlp.pos.ChemCrfPosTagger attribute) (chemdataextractor.nlp.pos.CrfPosTagger attribute) (chemdataextractor.nlp.tag.DictionaryTagger attribute) (chemdataextractor.nlp.tokenize.ChemSentenceTokenizer attribute) (chemdataextractor.nlp.tokenize.SentenceTokenizer attribute) (chemdataextractor.parse.auto.BaseAutoParser attribute) (chemdataextractor.parse.base.BaseParser attribute) ModelList (class in chemdataextractor.model.base) ModelMeta (class in chemdataextractor.model.base) ModelNotFoundError models (chemdataextractor.doc.document.Document attribute) (chemdataextractor.doc.element.BaseElement attribute) (chemdataextractor.doc.element.CaptionedElement attribute) ModelType (class in chemdataextractor.model.base) MpParser (class in chemdataextractor.parse.mp) multi_entity_phrase_1 (chemdataextractor.parse.template.MultiQuantityModelTemplateParser attribute) multi_entity_phrase_2 (chemdataextractor.parse.template.MultiQuantityModelTemplateParser attribute) multi_entity_phrase_3 (chemdataextractor.parse.template.MultiQuantityModelTemplateParser attribute) multi_entity_phrase_3a (chemdataextractor.parse.template.MultiQuantityModelTemplateParser attribute) multi_entity_phrase_3b (chemdataextractor.parse.template.MultiQuantityModelTemplateParser attribute) multi_entity_phrase_3c (chemdataextractor.parse.template.MultiQuantityModelTemplateParser attribute) multi_entity_phrase_4 (chemdataextractor.parse.template.MultiQuantityModelTemplateParser attribute) multi_entity_phrase_4a (chemdataextractor.parse.template.MultiQuantityModelTemplateParser attribute) multi_entity_phrase_4b (chemdataextractor.parse.template.MultiQuantityModelTemplateParser attribute) multi_entity_phrase_5 (chemdataextractor.parse.template.MultiQuantityModelTemplateParser attribute) multiplicity (chemdataextractor.model.model.NmrPeak attribute) MultiQuantityModelTemplateParser (class in chemdataextractor.parse.template)

N

name (chemdataextractor.model.base.BaseType attribute) (chemdataextractor.model.model.Apparatus attribute) (chemdataextractor.scrape.base.BaseField attribute) (chemdataextractor.scrape.pub.rsc.RscLandingSupplement attribute) name() (chemdataextractor.scrape.base.BaseScraper method) NAME_SMALL (in module chemdataextractor.text) names (chemdataextractor.model.model.Compound attribute) namespaces (chemdataextractor.scrape.clean.Cleaner attribute) (chemdataextractor.scrape.scraper.RssScraper attribute) (chemdataextractor.scrape.scraper.XmlFormat attribute) NeelTemperature (class in chemdataextractor.model.model) ner_tagged_tokens (chemdataextractor.doc.text.Sentence attribute) (chemdataextractor.doc.text.Text attribute) ner_tagger (chemdataextractor.doc.text.BaseText attribute) ner_tags (chemdataextractor.doc.document.Document attribute) (chemdataextractor.doc.element.CaptionedElement attribute) (chemdataextractor.doc.text.Sentence attribute) (chemdataextractor.doc.text.Text attribute) NlmXmlAuthor (class in chemdataextractor.scrape.pub.nlm) NlmXmlDocument (class in chemdataextractor.scrape.pub.nlm) NlmXmlImage (class in chemdataextractor.scrape.pub.nlm) NlmXmlReader (class in chemdataextractor.reader.nlm) NlmXmlTable (class in chemdataextractor.scrape.pub.nlm) NmrParser (class in chemdataextractor.parse.nmr) NmrPeak (class in chemdataextractor.model.model) NmrSpectrum (class in chemdataextractor.model.model) NO_SPLIT (chemdataextractor.nlp.tokenize.ChemWordTokenizer attribute) (chemdataextractor.nlp.tokenize.FineWordTokenizer attribute) (chemdataextractor.nlp.tokenize.WordTokenizer attribute)

NO_SPLIT_CHARS (chemdataextractor.nlp.tokenize.WordTokenizer attribute) NO_SPLIT_CHEM (chemdataextractor.nlp.tokenize.ChemWordTokenizer attribute) NO_SPLIT_PREFIX (chemdataextractor.nlp.tokenize.ChemWordTokenizer attribute) (chemdataextractor.nlp.tokenize.FineWordTokenizer attribute) (chemdataextractor.nlp.tokenize.WordTokenizer attribute) NO_SPLIT_PREFIX_ENDING (chemdataextractor.nlp.tokenize.ChemWordTokenizer attribute) NO_SPLIT_SLASH (chemdataextractor.nlp.tokenize.ChemWordTokenizer attribute) NO_SPLIT_STOP (chemdataextractor.nlp.tokenize.WordTokenizer attribute) NO_SPLIT_SUFFIX (chemdataextractor.nlp.tokenize.FineWordTokenizer attribute) (chemdataextractor.nlp.tokenize.WordTokenizer attribute) NoMatch (class in chemdataextractor.parse.elements) noncontextual_required_fulfilled (chemdataextractor.model.base.BaseModel attribute) NoneTagger (class in chemdataextractor.nlp.tag) normalize (in module chemdataextractor.text.normalize) normalize() (chemdataextractor.text.normalize.BaseNormalizer method) (chemdataextractor.text.normalize.ChemNormalizer method) (chemdataextractor.text.normalize.ExcessNormalizer method) (chemdataextractor.text.normalize.Normalizer method) normalized (chemdataextractor.nlp.lexicon.Lexeme attribute) normalized() (chemdataextractor.nlp.lexicon.Lexicon method) normalizer (chemdataextractor.nlp.lexicon.ChemLexicon attribute) (chemdataextractor.nlp.lexicon.Lexicon attribute) Normalizer (class in chemdataextractor.text.normalize) Not (class in chemdataextractor.parse.elements) nucleus (chemdataextractor.model.model.NmrSpectrum attribute) number (chemdataextractor.model.model.NmrPeak attribute) number_pattern (chemdataextractor.nlp.allennlpwrapper.ProcessedTextTagger attribute) number_string (chemdataextractor.nlp.allennlpwrapper.ProcessedTextTagger attribute) NUMBERS (in module chemdataextractor.text)

O

OneOrMore (class in chemdataextractor.parse.elements) online_date (chemdataextractor.scrape.entity.DocumentEntity attribute) online_day (chemdataextractor.scrape.pub.nlm.NlmXmlDocument attribute) online_month (chemdataextractor.scrape.pub.nlm.NlmXmlDocument attribute)

online_year (chemdataextractor.scrape.pub.nlm.NlmXmlDocument attribute) Optional (class in chemdataextractor.parse.elements) Or (class in chemdataextractor.parse.elements) overrides (chemdataextractor.nlp.allennlpwrapper.AllenNlpWrapperTagger attribute) (chemdataextractor.nlp.new_cem.BertFinetunedCRFCemTagger attribute)

P

Package (class in chemdataextractor.data) PACKAGES (in module chemdataextractor.data) pages (chemdataextractor.scrape.pub.elsevier.ElsevierXmlDocument attribute) Paragraph (class in chemdataextractor.doc.text) paragraphs (chemdataextractor.doc.document.Document attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierHtmlDocument attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierXmlDocument attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute) params (chemdataextractor.nlp.cem.CrfCemTagger attribute) (chemdataextractor.nlp.tag.CrfTagger attribute) parse() (chemdataextractor.biblio.bibtex.BibtexParser method) (chemdataextractor.biblio.xmp.XmpParser method) (chemdataextractor.parse.elements.BaseParserElement method) (chemdataextractor.reader.base.BaseReader method) (chemdataextractor.reader.markup.LxmlReader method) (chemdataextractor.reader.pdf.PdfReader method) (chemdataextractor.reader.plaintext.PlainTextReader method) parse_bibtex() (in module chemdataextractor.biblio.bibtex) parse_cell() (chemdataextractor.parse.base.BaseTableParser method) parse_full_sentence (chemdataextractor.parse.base.BaseSentenceParser attribute) (chemdataextractor.parse.cem.CompoundHeadingParser attribute) (chemdataextractor.parse.ir.IrParser attribute) (chemdataextractor.parse.nmr.NmrParser attribute) (chemdataextractor.parse.template.MultiQuantityModelTemplateParser attribute) parse_names() (chemdataextractor.biblio.bibtex.BibtexParser class method) parse_rsc_html() (in module chemdataextractor.scrape.pub.rsc) parse_sentence() (chemdataextractor.parse.base.BaseSentenceParser method) parse_xmp() (in module chemdataextractor.biblio.xmp) ParseElementEnhance (class in chemdataextractor.parse.elements) ParseException ParseExpression (class in chemdataextractor.parse.elements) parsers (chemdataextractor.model.base.BaseModel attribute) (chemdataextractor.model.model.Apparatus attribute) (chemdataextractor.model.model.CNLabel attribute) (chemdataextractor.model.model.Compound attribute) (chemdataextractor.model.model.CoordinationNumber attribute) (chemdataextractor.model.model.CurieTemperature attribute) (chemdataextractor.model.model.ElectrochemicalPotential attribute) (chemdataextractor.model.model.FluorescenceLifetime attribute) (chemdataextractor.model.model.GlassTransition attribute) (chemdataextractor.model.model.InteratomicDistance attribute) (chemdataextractor.model.model.IrPeak attribute) (chemdataextractor.model.model.IrSpectrum attribute) (chemdataextractor.model.model.MeltingPoint attribute) (chemdataextractor.model.model.NeelTemperature attribute) (chemdataextractor.model.model.NmrPeak attribute) (chemdataextractor.model.model.NmrSpectrum attribute) (chemdataextractor.model.model.QuantumYield attribute) (chemdataextractor.model.model.UvvisPeak attribute) (chemdataextractor.model.model.UvvisSpectrum attribute) (chemdataextractor.model.units.length.LengthModel attribute) (chemdataextractor.model.units.mass.MassModel attribute) (chemdataextractor.model.units.quantity_model.DimensionlessModel attribute) (chemdataextractor.model.units.quantity_model.QuantityModel attribute) (chemdataextractor.model.units.temperature.TemperatureModel attribute) (chemdataextractor.model.units.time.TimeModel attribute) path (chemdataextractor.config.Config attribute) (chemdataextractor.scrape.selector.Selector attribute) Pattern (class in chemdataextractor.relex.pattern) patterns (chemdataextractor.nlp.tag.RegexTagger attribute) pdf_url (chemdataextractor.doc.meta.MetaData attribute) (chemdataextractor.scrape.entity.DocumentEntity attribute) (chemdataextractor.scrape.pub.rsc.RscHtmlDocument attribute) (chemdataextractor.scrape.pub.rsc.RscSearchDocument attribute) PdfReader (class in chemdataextractor.reader.pdf) peaks (chemdataextractor.model.model.IrSpectrum attribute) (chemdataextractor.model.model.NmrSpectrum attribute) (chemdataextractor.model.model.UvvisSpectrum attribute) perform_search() (chemdataextractor.scrape.pub.rsc.RscSearchScraper method) (chemdataextractor.scrape.scraper.SearchScraper method) PersonName (class in chemdataextractor.biblio.person) Phrase (class in chemdataextractor.relex.phrase) PlainTextReader (class in chemdataextractor.reader.plaintext) PLUSES (in module chemdataextractor.text) pmcid (chemdataextractor.scrape.pub.nlm.NlmXmlDocument attribute) pmid (chemdataextractor.scrape.pub.nlm.NlmXmlDocument attribute) pos_cli() (in module chemdataextractor.cli.pos) pos_tagged_tokens (chemdataextractor.doc.text.Sentence attribute) (chemdataextractor.doc.text.Text attribute) pos_tagger (chemdataextractor.doc.text.BaseText attribute) pos_tags (chemdataextractor.doc.text.Sentence attribute) (chemdataextractor.doc.text.Text attribute) PostRequester (class in chemdataextractor.scrape.scraper) Pound (class in chemdataextractor.model.units.mass) predict() (chemdataextractor.nlp.tag.AveragedPerceptron method) predictor (chemdataextractor.nlp.allennlpwrapper.AllenNlpWrapperTagger attribute)

prefix (chemdataextractor.parse.template.MultiQuantityModelTemplateParser attribute) (chemdataextractor.parse.template.QuantityModelTemplateParser attribute) prefix_only (chemdataextractor.parse.template.MultiQuantityModelTemplateParser attribute) prepare_gold() (in module chemdataextractor.cli.chemdner) prepare_include() (in module chemdataextractor.cli.dict) prepare_jochem() (in module chemdataextractor.cli.dict) prepare_tokens() (in module chemdataextractor.cli.chemdner) PRIMES (in module chemdataextractor.text) process() (chemdataextractor.model.base.BaseType method) (chemdataextractor.model.base.FloatType method) (chemdataextractor.model.base.InferredProperty method) (chemdataextractor.model.base.ModelType method) (chemdataextractor.model.base.StringType method) (chemdataextractor.model.units.unit.UnitType method) (chemdataextractor.nlp.allennlpwrapper.AllenNlpWrapperTagger method) (chemdataextractor.nlp.new_cem.BertFinetunedCRFCemTagger method) (chemdataextractor.scrape.base.BaseField method) (chemdataextractor.scrape.fields.BoolField method) (chemdataextractor.scrape.fields.DateTimeField method) (chemdataextractor.scrape.fields.FloatField method) (chemdataextractor.scrape.fields.IntField method) (chemdataextractor.scrape.fields.StringField method) (chemdataextractor.scrape.fields.UrlField method) process_abstract (chemdataextractor.scrape.entity.DocumentEntity attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierXmlDocument attribute) (chemdataextractor.scrape.pub.nlm.NlmXmlDocument attribute) (chemdataextractor.scrape.pub.rsc.RscHtmlDocument attribute) (chemdataextractor.scrape.pub.rsc.RscLandingDocument attribute) (chemdataextractor.scrape.pub.rsc.RscSearchDocument attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute) process_authors (chemdataextractor.scrape.entity.DocumentEntity attribute) process_caption (chemdataextractor.scrape.pub.elsevier.ElsevierImage attribute) (chemdataextractor.scrape.pub.nlm.NlmXmlImage attribute) (chemdataextractor.scrape.pub.nlm.NlmXmlTable attribute) (chemdataextractor.scrape.pub.rsc.RscImage attribute) (chemdataextractor.scrape.pub.rsc.RscTable attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlImage attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlTable attribute) process_chemspider_id (chemdataextractor.scrape.pub.rsc.RscChemicalMention attribute) process_doi (chemdataextractor.scrape.pub.rsc.RscSearchDocument attribute) process_email (chemdataextractor.scrape.pub.springer.SpringerXmlAuthor attribute) process_entity() (chemdataextractor.scrape.base.BaseEntityProcessor method) (chemdataextractor.scrape.base.BaseScraper method) process_givennames (chemdataextractor.scrape.pub.nlm.NlmXmlAuthor attribute) process_headings (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute) process_html_url (chemdataextractor.scrape.pub.rsc.RscSearchDocument attribute) (chemdataextractor.scrape.pub.springer.SpringerHtmlDocument attribute) process_image_url (chemdataextractor.scrape.pub.elsevier.ElsevierImage attribute) process_inchi (chemdataextractor.scrape.pub.rsc.RscChemicalMention attribute) process_journal (chemdataextractor.scrape.entity.DocumentEntity attribute) process_landing_url (chemdataextractor.scrape.pub.rsc.RscSearchDocument attribute) process_lastname (chemdataextractor.scrape.pub.nlm.NlmXmlAuthor attribute) process_license (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute) process_paragraphs (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute) process_pdf_url (chemdataextractor.scrape.pub.rsc.RscSearchDocument attribute) process_publisher (chemdataextractor.scrape.entity.DocumentEntity attribute) (chemdataextractor.scrape.pub.nlm.NlmXmlDocument attribute) process_query() (chemdataextractor.scrape.scraper.SearchScraper method) process_response() (chemdataextractor.scrape.base.BaseFormat method) (chemdataextractor.scrape.base.BaseScraper method) (chemdataextractor.scrape.scraper.HtmlFormat method) (chemdataextractor.scrape.scraper.XmlFormat method) process_text (chemdataextractor.scrape.pub.rsc.RscChemicalMention attribute) process_title (chemdataextractor.scrape.entity.DocumentEntity attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierTable attribute) (chemdataextractor.scrape.pub.nlm.NlmXmlDocument attribute) (chemdataextractor.scrape.pub.rsc.RscHtmlDocument attribute) (chemdataextractor.scrape.pub.rsc.RscRssDocument attribute) (chemdataextractor.scrape.pub.rsc.RscSearchDocument attribute) process_url() (chemdataextractor.scrape.scraper.UrlScraper method) process_xpaths (chemdataextractor.scrape.clean.Cleaner attribute) ProcessedTextTagger (class in chemdataextractor.nlp.allennlpwrapper) published_date (chemdataextractor.scrape.entity.DocumentEntity attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierHtmlDocument attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierXmlDocument attribute) published_day (chemdataextractor.scrape.pub.nlm.NlmXmlDocument attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute) published_month (chemdataextractor.scrape.pub.nlm.NlmXmlDocument attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute) published_year (chemdataextractor.scrape.pub.nlm.NlmXmlDocument attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute) publisher (chemdataextractor.doc.meta.MetaData attribute) (chemdataextractor.scrape.entity.DocumentEntity attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierXmlDocument attribute) (chemdataextractor.scrape.pub.nlm.NlmXmlDocument attribute) python_2_unicode_compatible() (in module chemdataextractor.utils)

Q

quantity_re (chemdataextractor.doc.text.Sentence attribute) QUANTITY_RE (chemdataextractor.nlp.tokenize.ChemWordTokenizer attribute) QuantityModel (class in chemdataextractor.model.units.quantity_model)

QuantityModelTemplateParser (class in chemdataextractor.parse.template) QuantumYield (class in chemdataextractor.model.model) QUOTES (in module chemdataextractor.text)

R

R (in module chemdataextractor.parse.elements) RAdd (class in chemdataextractor.text.processors) raw_sentences (chemdataextractor.doc.text.Text attribute) raw_tokens (chemdataextractor.doc.text.Sentence attribute) (chemdataextractor.doc.text.Text attribute) raw_units (chemdataextractor.model.units.quantity_model.DimensionlessModel attribute) (chemdataextractor.model.units.quantity_model.QuantityModel attribute) raw_value (chemdataextractor.model.units.quantity_model.QuantityModel attribute) re() (chemdataextractor.scrape.selector.Selector method) (chemdataextractor.scrape.selector.SelectorList method) read() (chemdataextractor.reader.base.BaseReader method) (in module chemdataextractor.cli) ReaderError readstring() (chemdataextractor.reader.base.BaseReader method) received_day (chemdataextractor.scrape.pub.nlm.NlmXmlDocument attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute) received_month (chemdataextractor.scrape.pub.nlm.NlmXmlDocument attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute) received_year (chemdataextractor.scrape.pub.nlm.NlmXmlDocument attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute) record_method (chemdataextractor.model.base.BaseModel attribute) records (chemdataextractor.doc.document.BaseDocument attribute) (chemdataextractor.doc.document.Document attribute) (chemdataextractor.doc.element.BaseElement attribute) (chemdataextractor.doc.element.CaptionedElement attribute) (chemdataextractor.doc.figure.Figure attribute) (chemdataextractor.doc.meta.MetaData attribute) (chemdataextractor.doc.table.Table attribute) (chemdataextractor.doc.text.Cell attribute) (chemdataextractor.doc.text.Sentence attribute) (chemdataextractor.doc.text.Subsentence attribute) (chemdataextractor.doc.text.Text attribute) records_list (chemdataextractor.biblio.bibtex.BibtexParser attribute) reference (chemdataextractor.scrape.pub.nlm.NlmXmlImage attribute) (chemdataextractor.scrape.pub.nlm.NlmXmlTable attribute) (chemdataextractor.scrape.pub.rsc.RscImage attribute) (chemdataextractor.scrape.pub.rsc.RscTable attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlImage attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlTable attribute) reference_css (chemdataextractor.reader.elsevier.ElsevierXmlReader attribute) (chemdataextractor.reader.markup.LxmlReader attribute) (chemdataextractor.reader.nlm.NlmXmlReader attribute) (chemdataextractor.reader.rsc.RscHtmlReader attribute) (chemdataextractor.reader.uspto.UsptoXmlReader attribute) Regex (class in chemdataextractor.parse.elements) regex_span_tokenize() (in module chemdataextractor.nlp.tokenize) RegexTagger (class in chemdataextractor.nlp.tag) Relation (class in chemdataextractor.relex.relationship) remote_exists() (chemdataextractor.data.Package method) remote_path (chemdataextractor.data.Package attribute) remove() (in module chemdataextractor.cli.config) remove_if_reference() (in module chemdataextractor.reader.elsevier) remove_subsets() (chemdataextractor.model.base.ModelList method) replace_rsc_img_chars() (in module chemdataextractor.scrape.pub.rsc) required_fields (chemdataextractor.model.base.ModelMeta attribute) required_fulfilled (chemdataextractor.model.base.BaseModel attribute) reset() (chemdataextractor.model.base.BaseType method)

reset_updatables() (chemdataextractor.model.base.BaseModel class method) reset_vectors() (chemdataextractor.relex.phrase.Phrase method) ResponseSearchResult (class in chemdataextractor.scrape.scraper) RichToken (class in chemdataextractor.doc.text) rij_label (chemdataextractor.model.model.InteratomicDistance attribute) roles (chemdataextractor.model.model.Compound attribute) root (chemdataextractor.parse.auto.AutoSentenceParser attribute) (chemdataextractor.parse.auto.AutoTableParser attribute) (chemdataextractor.parse.base.BaseParser attribute) (chemdataextractor.parse.cem.ChemicalLabelParser attribute) (chemdataextractor.parse.cem.CompoundHeadingParser attribute) (chemdataextractor.parse.cem.CompoundParser attribute) (chemdataextractor.parse.cem.CompoundTableParser attribute) (chemdataextractor.parse.ir.IrParser attribute) (chemdataextractor.parse.mp.MpParser attribute) (chemdataextractor.parse.nmr.NmrParser attribute) (chemdataextractor.parse.template.MultiQuantityModelTemplateParser attribute) (chemdataextractor.parse.template.QuantityModelTemplateParser attribute) (chemdataextractor.parse.tg.TgParser attribute) (chemdataextractor.parse.uvvis.UvvisParser attribute) (chemdataextractor.scrape.base.BaseScraper attribute) (chemdataextractor.scrape.pub.rsc.RscSearchScraper attribute) (chemdataextractor.scrape.scraper.RssScraper attribute) root_css (chemdataextractor.reader.acs.AcsHtmlReader attribute) (chemdataextractor.reader.cssp.CsspHtmlReader attribute) (chemdataextractor.reader.elsevier.ElsevierXmlReader attribute) (chemdataextractor.reader.markup.LxmlReader attribute) (chemdataextractor.reader.nlm.NlmXmlReader attribute) (chemdataextractor.reader.rsc.RscHtmlReader attribute) (chemdataextractor.reader.springer.SpringerHtmlReader attribute) (chemdataextractor.reader.springer.SpringerMaterialsHtmlReader attribute) (chemdataextractor.reader.uspto.UsptoXmlReader attribute) root_xpath (chemdataextractor.scrape.base.BaseScraper attribute) rows (chemdataextractor.scrape.pub.elsevier.ElsevierTableData attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierXmlTableData attribute) rsc_html_whitespace() (in module chemdataextractor.reader.rsc) RSC_IMG_CHARS (in module chemdataextractor.scrape.pub.rsc) rsc_substitute (in module chemdataextractor.scrape.pub.rsc) RscChemicalMention (class in chemdataextractor.scrape.pub.rsc) RscHtmlDocument (class in chemdataextractor.scrape.pub.rsc) RscHtmlReader (class in chemdataextractor.reader.rsc) RscHtmlScraper (class in chemdataextractor.scrape.pub.rsc) RscImage (class in chemdataextractor.scrape.pub.rsc) RscLandingDocument (class in chemdataextractor.scrape.pub.rsc) RscLandingScraper (class in chemdataextractor.scrape.pub.rsc) RscLandingSupplement (class in chemdataextractor.scrape.pub.rsc) RscRssDocument (class in chemdataextractor.scrape.pub.rsc) RscRssScraper (class in chemdataextractor.scrape.pub.rsc) RscSearchDocument (class in chemdataextractor.scrape.pub.rsc) RscSearchScraper (class in chemdataextractor.scrape.pub.rsc) RscTable (class in chemdataextractor.scrape.pub.rsc) RssScraper (class in chemdataextractor.scrape.scraper) RStrip (class in chemdataextractor.text.processors) run() (chemdataextractor.scrape.pub.elsevier.ElsevierSearchScraper method) (chemdataextractor.scrape.scraper.SearchScraper method) (chemdataextractor.scrape.scraper.UrlScraper method) (in module chemdataextractor.cli.evaluate)

S

safe_name() (in module chemdataextractor.parse.elements) save() (chemdataextractor.nlp.tag.ApTagger method) (chemdataextractor.nlp.tag.AveragedPerceptron method) (chemdataextractor.nlp.tag.DictionaryTagger method) scan() (chemdataextractor.parse.elements.BaseParserElement method) schemes (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute) scrape() (chemdataextractor.scrape.base.BaseField method) (chemdataextractor.scrape.entity.Entity class method) (chemdataextractor.scrape.fields.EntityField method) SearchResult (class in chemdataextractor.scrape.scraper) SearchScraper (class in chemdataextractor.scrape.scraper) Second (class in chemdataextractor.model.units.time) selector (chemdataextractor.scrape.scraper.ResponseSearchResult attribute) (chemdataextractor.scrape.scraper.SearchResult attribute) (chemdataextractor.scrape.scraper.SeleniumSearchResult attribute) Selector (class in chemdataextractor.scrape.selector) SelectorList (class in chemdataextractor.scrape.selector) SeleniumSearchResult (class in chemdataextractor.scrape.scraper) Sentence (class in chemdataextractor.doc.text) sentence_tokenizer (chemdataextractor.doc.text.Text attribute) sentences (chemdataextractor.doc.document.Document attribute) (chemdataextractor.doc.text.Text attribute) sentences() (in module chemdataextractor.cli.tokenize) SentenceTokenizer (class in chemdataextractor.nlp.tokenize) serialize() (chemdataextractor.doc.document.Document method) (chemdataextractor.doc.element.CaptionedElement method) (chemdataextractor.doc.meta.MetaData method) (chemdataextractor.doc.table.Table method) (chemdataextractor.doc.text.BaseText method) (chemdataextractor.model.base.BaseModel method) (chemdataextractor.model.base.BaseType method) (chemdataextractor.model.base.InferredProperty method) (chemdataextractor.model.base.ListType method) (chemdataextractor.model.base.ModelList method) (chemdataextractor.model.base.ModelType method) (chemdataextractor.model.base.SetType method) (chemdataextractor.model.units.unit.UnitType method) (chemdataextractor.relex.entity.Entity method) (chemdataextractor.relex.relationship.Relation method) (chemdataextractor.scrape.base.BaseField method) (chemdataextractor.scrape.entity.Entity method) (chemdataextractor.scrape.entity.EntityList method) (chemdataextractor.scrape.fields.DateTimeField method) set() (in module chemdataextractor.cli.config) set_action() (chemdataextractor.parse.elements.BaseParserElement method) set_confidence() (chemdataextractor.model.base.BaseModel method) set_config() (chemdataextractor.doc.text.Text method) set_name() (chemdataextractor.parse.elements.BaseParserElement method) SetType (class in chemdataextractor.model.base) shape (chemdataextractor.model.model.UvvisPeak attribute) (chemdataextractor.nlp.lexicon.Lexeme attribute) shape() (chemdataextractor.nlp.lexicon.Lexicon method) shift (chemdataextractor.model.model.NmrPeak attribute) should_read_section() (chemdataextractor.parse.base.BaseSentenceParser method) single_cem (chemdataextractor.parse.template.MultiQuantityModelTemplateParser attribute) SINGLE_QUOTES (in module chemdataextractor.text) single_specifier_and_value (chemdataextractor.parse.template.MultiQuantityModelTemplateParser attribute) single_specifier_and_value_with_optional_unit (chemdataextractor.parse.template.MultiQuantityModelTemplateParser attribute) Singleton (class in chemdataextractor.utils) size (chemdataextractor.biblio.bibtex.BibtexParser attribute) skip_section_phrase (chemdataextractor.parse.base.BaseParser attribute) SkipTo (class in chemdataextractor.parse.elements) SLASHES (in module chemdataextractor.text) SMALL (in module chemdataextractor.text) solvent (chemdataextractor.model.model.ElectrochemicalPotential attribute) (chemdataextractor.model.model.FluorescenceLifetime attribute) (chemdataextractor.model.model.IrSpectrum attribute) (chemdataextractor.model.model.MeltingPoint attribute) (chemdataextractor.model.model.NmrSpectrum attribute) (chemdataextractor.model.model.QuantumYield attribute) (chemdataextractor.model.model.UvvisSpectrum attribute) sort_merge_candidates() (in module chemdataextractor.model.base) space_labels() (in module chemdataextractor.scrape.pub.nlm) space_references() (in module chemdataextractor.scrape.pub.rsc) Span (class in chemdataextractor.doc.text) span_tokenize() (chemdataextractor.nlp.tokenize.BaseTokenizer method) (chemdataextractor.nlp.tokenize.BertWordTokenizer method) (chemdataextractor.nlp.tokenize.SentenceTokenizer method) (chemdataextractor.nlp.tokenize.WordTokenizer method) species (chemdataextractor.model.model.InteratomicDistance attribute) specifier (chemdataextractor.model.base.BaseModel attribute) (chemdataextractor.model.model.CNLabel attribute) (chemdataextractor.model.model.CoordinationNumber attribute) (chemdataextractor.model.model.CurieTemperature attribute) (chemdataextractor.model.model.InteratomicDistance attribute) (chemdataextractor.model.model.NeelTemperature attribute) (chemdataextractor.model.units.quantity_model.QuantityModel attribute)

specifier_and_value (chemdataextractor.parse.template.QuantityModelTemplateParser attribute) specifier_before_cem_and_value_phrase (chemdataextractor.parse.template.QuantityModelTemplateParser attribute) specifier_definition (chemdataextractor.doc.text.Sentence attribute) specifier_expression (chemdataextractor.model.model.CoordinationNumber attribute) (chemdataextractor.model.model.InteratomicDistance attribute) specifier_phrase (chemdataextractor.parse.template.MultiQuantityModelTemplateParser attribute) (chemdataextractor.parse.template.QuantityModelTemplateParser attribute) SPLIT (chemdataextractor.nlp.tokenize.ChemWordTokenizer attribute) (chemdataextractor.nlp.tokenize.FineWordTokenizer attribute) (chemdataextractor.nlp.tokenize.WordTokenizer attribute) SPLIT_END (chemdataextractor.nlp.tokenize.ChemWordTokenizer attribute) SPLIT_END_NO_DIGIT (chemdataextractor.nlp.tokenize.ChemWordTokenizer attribute) SPLIT_END_WORD (chemdataextractor.nlp.tokenize.WordTokenizer attribute) split_last_stop (chemdataextractor.nlp.tokenize.WordTokenizer attribute) SPLIT_NO_DIGIT (chemdataextractor.nlp.tokenize.FineWordTokenizer attribute) (chemdataextractor.nlp.tokenize.WordTokenizer attribute) SPLIT_START_WORD (chemdataextractor.nlp.tokenize.WordTokenizer attribute) SPLIT_SUFFIX (chemdataextractor.nlp.tokenize.ChemWordTokenizer attribute) SPLITS (in module chemdataextractor.nlp.cem) springer_html_whitespace() (in module chemdataextractor.reader.springer) SpringerHtmlDocument (class in chemdataextractor.scrape.pub.springer) SpringerHtmlReader (class in chemdataextractor.reader.springer) SpringerMaterialsHtmlReader (class in chemdataextractor.reader.springer) SpringerXmlAuthor (class in chemdataextractor.scrape.pub.springer) SpringerXmlDocument (class in chemdataextractor.scrape.pub.springer) SpringerXmlImage (class in chemdataextractor.scrape.pub.springer) SpringerXmlTable (class in chemdataextractor.scrape.pub.springer) src (chemdataextractor.scrape.pub.nlm.NlmXmlTable attribute) (chemdataextractor.scrape.pub.rsc.RscTable attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlTable attribute) standard (chemdataextractor.model.model.NmrSpectrum attribute) (chemdataextractor.model.model.QuantumYield attribute) standard_solvent (chemdataextractor.model.model.QuantumYield attribute) standard_units (chemdataextractor.model.units.dimension.Dimension attribute) (chemdataextractor.model.units.dimension.Dimensionless attribute) (chemdataextractor.model.units.length.Length attribute) (chemdataextractor.model.units.mass.Mass attribute) (chemdataextractor.model.units.temperature.Temperature attribute) (chemdataextractor.model.units.time.Time attribute) (in module chemdataextractor.model.units) (in module chemdataextractor.model.units.dimension) standard_value (chemdataextractor.model.model.QuantumYield attribute) standardize_role() (in module chemdataextractor.parse.cem) start (chemdataextractor.doc.text.Sentence attribute) (chemdataextractor.doc.text.Span attribute) START (chemdataextractor.nlp.tag.ApTagger attribute) Start (class in chemdataextractor.parse.elements) STOP_RES (in module chemdataextractor.nlp.cem) STOP_SUB (in module chemdataextractor.nlp.cem) STOP_TOKENS (in module chemdataextractor.nlp.cem) STOPLIST (in module chemdataextractor.nlp.cem) streamline() (chemdataextractor.parse.elements.BaseParserElement method) (chemdataextractor.parse.elements.ParseElementEnhance method) (chemdataextractor.parse.elements.ParseExpression method) streamlined (chemdataextractor.parse.elements.BaseParserElement attribute) strength (chemdataextractor.model.model.IrPeak attribute) strict_normalize (in module chemdataextractor.text.normalize) StringField (class in chemdataextractor.scrape.fields) StringType (class in chemdataextractor.model.base) strip (in module chemdataextractor.scrape.clean) strip_cit_html (in module chemdataextractor.scrape.pub.rsc) strip_delta() (in module chemdataextractor.parse.nmr) STRIP_END (in module chemdataextractor.nlp.cem) strip_html (in module chemdataextractor.scrape.clean) strip_markup (in module chemdataextractor.scrape.clean) strip_pmc_abstract_xml (in module chemdataextractor.scrape.pub.nlm) strip_pmc_paragraph_xml (in module chemdataextractor.scrape.pub.nlm) strip_pmc_xml (in module chemdataextractor.scrape.pub.nlm) strip_querystring() (in module chemdataextractor.text.processors) strip_rsc_html (in module chemdataextractor.scrape.pub.rsc) strip_springer_abstract_xml (in module chemdataextractor.scrape.pub.springer) strip_springer_xml (in module chemdataextractor.scrape.pub.springer) STRIP_START (in module chemdataextractor.nlp.cem) strip_stop() (in module chemdataextractor.parse.actions) strip_xpath (chemdataextractor.scrape.clean.Cleaner attribute) sub_headings (chemdataextractor.scrape.pub.elsevier.ElsevierHtmlDocument attribute) subfinder() (in module chemdataextractor.relex.utils) Subsentence (class in chemdataextractor.doc.text) subsentence_extractor (chemdataextractor.doc.text.Cell attribute) (chemdataextractor.doc.text.Citation attribute) (chemdataextractor.doc.text.Sentence attribute) (chemdataextractor.doc.text.Text attribute) subsentences (chemdataextractor.doc.text.Sentence attribute) Substitutor (class in chemdataextractor.text.processors) suffix (chemdataextractor.nlp.lexicon.Lexeme attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlAuthor attribute) suffix() (chemdataextractor.nlp.lexicon.Lexicon method) supplements (chemdataextractor.scrape.pub.rsc.RscLandingDocument attribute)

T

T (in module chemdataextractor.parse.elements) Table (class in chemdataextractor.doc.table) table_body_row_css (chemdataextractor.reader.elsevier.ElsevierXmlReader attribute) (chemdataextractor.reader.markup.LxmlReader attribute) (chemdataextractor.reader.nlm.NlmXmlReader attribute) (chemdataextractor.reader.rsc.RscHtmlReader attribute) (chemdataextractor.reader.springer.SpringerHtmlReader attribute) (chemdataextractor.reader.springer.SpringerMaterialsHtmlReader attribute) (chemdataextractor.reader.uspto.UsptoXmlReader attribute) table_caption_css (chemdataextractor.reader.acs.AcsHtmlReader attribute) (chemdataextractor.reader.elsevier.ElsevierXmlReader attribute) (chemdataextractor.reader.markup.LxmlReader attribute) (chemdataextractor.reader.nlm.NlmXmlReader attribute) (chemdataextractor.reader.rsc.RscHtmlReader attribute) (chemdataextractor.reader.springer.SpringerHtmlReader attribute) (chemdataextractor.reader.springer.SpringerMaterialsHtmlReader attribute) table_cell_css (chemdataextractor.reader.elsevier.ElsevierXmlReader attribute) (chemdataextractor.reader.markup.LxmlReader attribute) (chemdataextractor.reader.springer.SpringerHtmlReader attribute) (chemdataextractor.reader.springer.SpringerMaterialsHtmlReader attribute) (chemdataextractor.reader.uspto.UsptoXmlReader attribute) table_css (chemdataextractor.reader.acs.AcsHtmlReader attribute) (chemdataextractor.reader.elsevier.ElsevierXmlReader attribute) (chemdataextractor.reader.markup.LxmlReader attribute) (chemdataextractor.reader.nlm.NlmXmlReader attribute) (chemdataextractor.reader.rsc.RscHtmlReader attribute) (chemdataextractor.reader.springer.SpringerHtmlReader attribute) (chemdataextractor.reader.springer.SpringerMaterialsHtmlReader attribute) (chemdataextractor.reader.uspto.UsptoXmlReader attribute) table_footnote_css (chemdataextractor.reader.acs.AcsHtmlReader attribute) (chemdataextractor.reader.elsevier.ElsevierXmlReader attribute) (chemdataextractor.reader.markup.LxmlReader attribute) (chemdataextractor.reader.nlm.NlmXmlReader attribute) (chemdataextractor.reader.rsc.RscHtmlReader attribute) table_head_row_css (chemdataextractor.reader.elsevier.ElsevierXmlReader attribute) (chemdataextractor.reader.markup.LxmlReader attribute) (chemdataextractor.reader.nlm.NlmXmlReader attribute) (chemdataextractor.reader.rsc.RscHtmlReader attribute) (chemdataextractor.reader.springer.SpringerHtmlReader attribute) (chemdataextractor.reader.springer.SpringerMaterialsHtmlReader attribute) tables (chemdataextractor.doc.document.Document attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierHtmlDocument attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierXmlDocument attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute) tag (chemdataextractor.scrape.selector.Selector attribute) Tag (class in chemdataextractor.parse.elements) tag() (chemdataextractor.nlp.allennlpwrapper.AllenNlpWrapperTagger method) (chemdataextractor.nlp.allennlpwrapper.ProcessedTextTagger method) (chemdataextractor.nlp.cem.CrfCemTagger method) (chemdataextractor.nlp.cem.LegacyCemTagger method) (chemdataextractor.nlp.tag.NoneTagger method) (chemdataextractor.nlp.tag.RegexTagger method) (in module chemdataextractor.cli.chemdner) (in module chemdataextractor.cli.dict) (in module chemdataextractor.cli.pos) tag_for_type() (chemdataextractor.nlp.tag.EnsembleTagger method) tag_sents() (chemdataextractor.nlp.tag.BaseTagger method) tag_type (chemdataextractor.nlp.allennlpwrapper.AllenNlpWrapperTagger attribute) (chemdataextractor.nlp.allennlpwrapper.ProcessedTextTagger attribute) (chemdataextractor.nlp.cem.CiDictCemTagger attribute) (chemdataextractor.nlp.cem.CrfCemTagger attribute) (chemdataextractor.nlp.cem.CsDictCemTagger attribute) (chemdataextractor.nlp.new_cem.BertFinetunedCRFCemTagger attribute) (chemdataextractor.nlp.pos.ApPosTagger attribute) (chemdataextractor.nlp.pos.ChemApPosTagger attribute) (chemdataextractor.nlp.pos.ChemCrfPosTagger attribute) (chemdataextractor.nlp.pos.CrfPosTagger attribute) (chemdataextractor.nlp.tag.BaseTagger attribute) (chemdataextractor.nlp.tag.EnsembleTagger attribute) tagged_tokens (chemdataextractor.doc.text.Sentence attribute) (chemdataextractor.doc.text.Text attribute) taggers (chemdataextractor.doc.text.BaseText attribute) (chemdataextractor.doc.text.Citation attribute) (chemdataextractor.doc.text.Sentence attribute) (chemdataextractor.doc.text.Text attribute) (chemdataextractor.nlp.cem.LegacyCemTagger attribute) (chemdataextractor.nlp.new_cem.CemTagger attribute) (chemdataextractor.nlp.tag.EnsembleTagger attribute) tags (chemdataextractor.doc.text.BaseText attribute) (chemdataextractor.doc.text.Sentence attribute) (chemdataextractor.doc.text.Text attribute) TAGS (in module chemdataextractor.nlp.pos) tde_table (chemdataextractor.doc.table.Table attribute)

temperature (chemdataextractor.model.model.ElectrochemicalPotential attribute) (chemdataextractor.model.model.FluorescenceLifetime attribute) (chemdataextractor.model.model.IrSpectrum attribute) (chemdataextractor.model.model.NmrSpectrum attribute) (chemdataextractor.model.model.QuantumYield attribute) (chemdataextractor.model.model.UvvisSpectrum attribute) Temperature (class in chemdataextractor.model.units.temperature) temperature_units (chemdataextractor.model.model.ElectrochemicalPotential attribute) (chemdataextractor.model.model.FluorescenceLifetime attribute) (chemdataextractor.model.model.IrSpectrum attribute) (chemdataextractor.model.model.NmrSpectrum attribute) (chemdataextractor.model.model.QuantumYield attribute) (chemdataextractor.model.model.UvvisSpectrum attribute) TemperatureModel (class in chemdataextractor.model.units.temperature) TemperatureUnit (class in chemdataextractor.model.units.temperature) test (chemdataextractor.scrape.pub.elsevier.ElsevierSearchDocument attribute) text (chemdataextractor.doc.text.BaseText attribute) (chemdataextractor.doc.text.Span attribute) (chemdataextractor.nlp.lexicon.Lexeme attribute) (chemdataextractor.scrape.pub.rsc.RscChemicalMention attribute) Text (class in chemdataextractor.doc.text) textnode (chemdataextractor.scrape.csstranslator.CdeXPathExpr attribute) TgParser (class in chemdataextractor.parse.tg) tidy_nlm_references() (in module chemdataextractor.scrape.pub.nlm) tidy_springer_references() (in module chemdataextractor.scrape.pub.springer) TILDES (in module chemdataextractor.text) Time (class in chemdataextractor.model.units.time) TimeModel (class in chemdataextractor.model.units.time) TimeUnit (class in chemdataextractor.model.units.time) title (chemdataextractor.doc.meta.MetaData attribute) (chemdataextractor.scrape.entity.DocumentEntity attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierHtmlDocument attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierTable attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierXmlDocument attribute) (chemdataextractor.scrape.pub.nlm.NlmXmlDocument attribute) (chemdataextractor.scrape.pub.rsc.RscHtmlDocument attribute) (chemdataextractor.scrape.pub.rsc.RscRssDocument attribute) (chemdataextractor.scrape.pub.rsc.RscSearchDocument attribute) (chemdataextractor.scrape.pub.springer.SpringerHtmlDocument attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute) Title (class in chemdataextractor.doc.text) title_css (chemdataextractor.reader.acs.AcsHtmlReader attribute) (chemdataextractor.reader.cssp.CsspHtmlReader attribute) (chemdataextractor.reader.elsevier.ElsevierXmlReader attribute) (chemdataextractor.reader.markup.LxmlReader attribute) (chemdataextractor.reader.nlm.NlmXmlReader attribute) (chemdataextractor.reader.rsc.RscHtmlReader attribute) (chemdataextractor.reader.springer.SpringerHtmlReader attribute) (chemdataextractor.reader.springer.SpringerMaterialsHtmlReader attribute) (chemdataextractor.reader.uspto.UsptoXmlReader attribute) titles (chemdataextractor.doc.document.Document attribute) to_json() (chemdataextractor.doc.document.Document method) (chemdataextractor.doc.element.BaseElement method) (chemdataextractor.model.base.BaseModel method) (chemdataextractor.model.base.ModelList method) (chemdataextractor.scrape.entity.Entity method) (chemdataextractor.scrape.entity.EntityList method) to_string() (chemdataextractor.relex.pattern.Pattern method) (chemdataextractor.relex.phrase.Phrase method) Token (class in chemdataextractor.doc.text) tokenize() (chemdataextractor.nlp.tokenize.BaseTokenizer method) tokenize_cli() (in module chemdataextractor.cli.tokenize) tokens (chemdataextractor.doc.text.BaseText attribute) (chemdataextractor.doc.text.Sentence attribute) (chemdataextractor.doc.text.Subsentence attribute) (chemdataextractor.doc.text.Text attribute) Tonne (class in chemdataextractor.model.units.mass) total_confidence() (chemdataextractor.model.base.BaseModel method) train() (chemdataextractor.nlp.tag.ApTagger method) (chemdataextractor.nlp.tag.CrfTagger method) (in module chemdataextractor.cli.pos) train_all() (in module chemdataextractor.cli.pos) train_crf() (in module chemdataextractor.cli.cem) train_perceptron() (in module chemdataextractor.cli.pos) train_punkt() (in module chemdataextractor.cli.tokenize) TranslatorMixin (class in chemdataextractor.scrape.csstranslator) treebank2_development (in module chemdataextractor.nlp.corpus) treebank2_evaluation (in module chemdataextractor.nlp.corpus) treebank2_training (in module chemdataextractor.nlp.corpus) trigger_phrase (chemdataextractor.parse.auto.AutoSentenceParser attribute) (chemdataextractor.parse.base.BaseParser attribute) try_parse() (chemdataextractor.parse.elements.BaseParserElement method) type (chemdataextractor.model.model.ElectrochemicalPotential attribute) (chemdataextractor.model.model.QuantumYield attribute)

U

ui (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute) unapostrophe() (in module chemdataextractor.text.processors) unit (chemdataextractor.parse.template.MultiQuantityModelTemplateParser attribute) Unit (class in chemdataextractor.model.units.unit) units (chemdataextractor.model.model.ElectrochemicalPotential attribute) (chemdataextractor.model.model.FluorescenceLifetime attribute) (chemdataextractor.model.model.GlassTransition attribute) (chemdataextractor.model.model.IrPeak attribute) (chemdataextractor.model.model.QuantumYield attribute) (chemdataextractor.model.model.UvvisPeak attribute) (chemdataextractor.model.units.quantity_model.QuantityModel attribute) units_dict (chemdataextractor.model.units.dimension.Dimension attribute) (chemdataextractor.model.units.length.Length attribute) (chemdataextractor.model.units.mass.Mass attribute) (chemdataextractor.model.units.temperature.Temperature attribute) (chemdataextractor.model.units.time.Time attribute) UnitType (class in chemdataextractor.model.units.unit) unprocessed_ner_tagged_tokens (chemdataextractor.doc.text.Sentence attribute) (chemdataextractor.doc.text.Text attribute) unprocessed_ner_tags (chemdataextractor.doc.text.Sentence attribute) (chemdataextractor.doc.text.Text attribute)

update() (chemdataextractor.model.base.BaseModel class method) (chemdataextractor.model.model.Compound class method) (chemdataextractor.nlp.tag.AveragedPerceptron method) update_dictionaries() (chemdataextractor.relex.cluster.Cluster method) update_pattern() (chemdataextractor.relex.cluster.Cluster method) update_pattern_confidence() (chemdataextractor.relex.cluster.Cluster method) update_weights() (chemdataextractor.relex.cluster.Cluster method) updated (chemdataextractor.model.base.BaseModel attribute) upper_count (chemdataextractor.nlp.lexicon.Lexeme attribute) upper_count() (chemdataextractor.nlp.lexicon.Lexicon method) url (chemdataextractor.scrape.pub.elsevier.ElsevierXmlDocument attribute) (chemdataextractor.scrape.pub.rsc.RscImage attribute) (chemdataextractor.scrape.pub.rsc.RscLandingSupplement attribute) url_prefix (chemdataextractor.reader.elsevier.ElsevierXmlReader attribute) UrlField (class in chemdataextractor.scrape.fields) UrlScraper (class in chemdataextractor.scrape.scraper) UsptoXmlReader (class in chemdataextractor.reader.uspto) UvvisParser (class in chemdataextractor.parse.uvvis) UvvisPeak (class in chemdataextractor.model.model) UvvisSpectrum (class in chemdataextractor.model.model)

V

value (chemdataextractor.model.model.ElectrochemicalPotential attribute) (chemdataextractor.model.model.FluorescenceLifetime attribute) (chemdataextractor.model.model.GlassTransition attribute) (chemdataextractor.model.model.IrPeak attribute) (chemdataextractor.model.model.QuantumYield attribute) (chemdataextractor.model.model.UvvisPeak attribute) (chemdataextractor.model.units.quantity_model.QuantityModel attribute) value_phrase (chemdataextractor.parse.template.MultiQuantityModelTemplateParser attribute) (chemdataextractor.parse.template.QuantityModelTemplateParser attribute)

value_specifier_cem_phrase (chemdataextractor.parse.template.QuantityModelTemplateParser attribute) value_with_optional_unit (chemdataextractor.parse.template.MultiQuantityModelTemplateParser attribute) values() (chemdataextractor.model.base.BaseModel method) vectorise() (in module chemdataextractor.relex.utils) volume (chemdataextractor.doc.meta.MetaData attribute) (chemdataextractor.scrape.entity.DocumentEntity attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierHtmlDocument attribute) (chemdataextractor.scrape.pub.elsevier.ElsevierXmlDocument attribute) (chemdataextractor.scrape.pub.nlm.NlmXmlDocument attribute) (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute)

W

W (in module chemdataextractor.parse.elements) where() (in module chemdataextractor.cli.data) with_condition() (chemdataextractor.parse.elements.BaseParserElement method) Word (class in chemdataextractor.parse.elements) word_shape() (in module chemdataextractor.text) word_tokenizer (chemdataextractor.doc.text.BaseText attribute) (chemdataextractor.doc.text.Sentence attribute) (chemdataextractor.doc.text.Text attribute)

words() (in module chemdataextractor.cli.tokenize) WordTokenizer (class in chemdataextractor.nlp.tokenize) wrap() (chemdataextractor.parse.elements.ParseException class method) wsj (in module chemdataextractor.nlp.corpus) wsj_development (in module chemdataextractor.nlp.corpus) wsj_evaluation (in module chemdataextractor.nlp.corpus) wsj_training (in module chemdataextractor.nlp.corpus)

X

XmlFormat (class in chemdataextractor.scrape.scraper) XmlReader (class in chemdataextractor.reader.markup) XmpParser (class in chemdataextractor.biblio.xmp) xpath() (chemdataextractor.scrape.selector.Selector method) (chemdataextractor.scrape.selector.SelectorList method)

xpath_attr_functional_pseudo_element() (chemdataextractor.scrape.csstranslator.TranslatorMixin method) xpath_element() (chemdataextractor.scrape.csstranslator.TranslatorMixin method) xpath_pseudo_element() (chemdataextractor.scrape.csstranslator.TranslatorMixin method) xpath_text_simple_pseudo_element() (chemdataextractor.scrape.csstranslator.TranslatorMixin method)

Y

year (chemdataextractor.scrape.pub.springer.SpringerXmlDocument attribute)

Year (class in chemdataextractor.model.units.time)

Z

ZeroOrMore (class in chemdataextractor.parse.elements)